Variant report

Variant	rs6470696
Chromosome Location	chr8:130122291-130122292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130121186..130123964-chr8:130124559..130126395,2	MCF-7	breast:
2	chr8:130121271..130122807-chr8:130124451..130126288,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10093150	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956463	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956464	0.94[ASN][1000 genomes]
rs10956465	0.85[ASN][1000 genomes]
rs12546355	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263573	0.80[AMR][1000 genomes]
rs13270479	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28459683	0.82[AMR][1000 genomes]
rs28540589	0.80[AMR][1000 genomes]
rs28628837	0.80[AMR][1000 genomes]
rs4289775	0.88[ASN][1000 genomes]
rs4310170	0.84[ASN][1000 genomes]
rs4448233	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524751	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4524752	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470698	0.84[ASN][1000 genomes]
rs6981888	0.84[ASN][1000 genomes]
rs6982195	0.84[ASN][1000 genomes]
rs6987260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989504	0.80[AMR][1000 genomes]
rs6996505	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7001827	0.84[ASN][1000 genomes]
rs7004434	0.80[AMR][1000 genomes]
rs7007293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72609876	0.86[ASN][1000 genomes]
rs7815753	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7821655	0.86[ASN][1000 genomes]
rs7824972	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831436	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7839556	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv612228	chr8:130115644-130130604	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130115600-130126800	Genic enhancers	Dnd41	blood
2	chr8:130116200-130124400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:130116400-130126000	Weak transcription	Pancreas	Pancrea
4	chr8:130116400-130127200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:130118200-130124000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:130118800-130125400	Weak transcription	Fetal Thymus	thymus
7	chr8:130120000-130129800	Weak transcription	Thymus	Thymus

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