Variant report

Variant	rs7815753
Chromosome Location	chr8:130131364-130131365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10093150	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956463	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956464	0.97[ASN][1000 genomes]
rs10956465	0.89[ASN][1000 genomes]
rs12541644	0.82[AFR][1000 genomes]
rs12546355	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13263573	0.80[AMR][1000 genomes]
rs13270479	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28459683	0.82[AMR][1000 genomes]
rs28540589	0.80[AMR][1000 genomes]
rs28628837	0.80[AMR][1000 genomes]
rs35721910	0.81[AFR][1000 genomes]
rs4289775	0.91[ASN][1000 genomes]
rs4310170	0.88[ASN][1000 genomes]
rs4448233	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4524751	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524752	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470697	0.82[EUR][1000 genomes]
rs6470698	0.88[ASN][1000 genomes]
rs6981888	0.90[ASN][1000 genomes]
rs6982195	0.90[ASN][1000 genomes]
rs6987260	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989504	0.80[AMR][1000 genomes]
rs6996505	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001827	0.90[ASN][1000 genomes]
rs7004434	0.80[AMR][1000 genomes]
rs7007293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7011330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72609876	0.89[ASN][1000 genomes]
rs7821655	0.90[ASN][1000 genomes]
rs7824972	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831436	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839556	0.89[ASN][1000 genomes]
rs7846150	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130124200-130133200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
3	chr8:130128600-130135200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:130130600-130132200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:130130800-130131600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130130800-130132600	Enhancers	Fetal Lung	lung
7	chr8:130131000-130131600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:130131000-130131600	Enhancers	Brain Germinal Matrix	brain
9	chr8:130131000-130131600	Enhancers	NH-A	brain
10	chr8:130131000-130131800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:130131000-130131800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:130131000-130131800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:130131000-130131800	Enhancers	Fetal Heart	heart
14	chr8:130131000-130132000	Enhancers	HUVEC	blood vessel
15	chr8:130131000-130132000	Enhancers	Osteobl	bone
16	chr8:130131200-130131400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:130131200-130131400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:130131200-130131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:130131200-130131800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:130131200-130131800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:130131200-130132000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:130131200-130132000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr8:130131200-130132000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr8:130131200-130132400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:130131200-130132600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:130131200-130136000	Genic enhancers	Dnd41	blood

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