Variant report
| Variant | rs7839556 |
|---|---|
| Chromosome Location | chr8:130145145-130145146 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:130144005..130147540-chr8:130149814..130152182,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10093150 | 0.90[ASN][1000 genomes] |
| rs10956463 | 0.88[ASN][1000 genomes] |
| rs10956464 | 0.90[ASN][1000 genomes] |
| rs10956465 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12541644 | 0.82[AMR][1000 genomes] |
| rs12546355 | 0.84[ASN][1000 genomes] |
| rs13270479 | 0.88[ASN][1000 genomes] |
| rs35721910 | 0.82[AMR][1000 genomes] |
| rs4289775 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4310170 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4448233 | 0.80[ASN][1000 genomes] |
| rs4524751 | 0.84[ASN][1000 genomes] |
| rs4524752 | 0.84[ASN][1000 genomes] |
| rs6470696 | 0.84[ASN][1000 genomes] |
| rs6470698 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6981888 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6982195 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6987260 | 0.84[ASN][1000 genomes] |
| rs6996505 | 0.90[ASN][1000 genomes] |
| rs7001827 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7007293 | 0.84[ASN][1000 genomes] |
| rs7011330 | 0.84[ASN][1000 genomes] |
| rs72609876 | 0.93[ASN][1000 genomes] |
| rs7815753 | 0.89[ASN][1000 genomes] |
| rs7821655 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7824972 | 0.84[ASN][1000 genomes] |
| rs7831436 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891443 | chr8:130016499-130220746 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2761241 | chr8:130139946-130146557 | Genic enhancers Weak transcription Strong transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv14496 | chr8:130140866-130145246 | Strong transcription Weak transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv3480047 | chr8:130140925-130145212 | Strong transcription Weak transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | esv3480044 | chr8:130140925-130145243 | Strong transcription Weak transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | esv3480046 | chr8:130140936-130145232 | Weak transcription Genic enhancers Strong transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | esv3480045 | chr8:130140959-130145212 | Genic enhancers Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:130126400-130160600 | Weak transcription | Fetal Thymus | thymus |
| 2 | chr8:130143000-130146000 | Strong transcription | Dnd41 | blood |
