Variant report

Variant	rs10956464
Chromosome Location	chr8:130135255-130135256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10093150	1.00[ASN][1000 genomes]
rs10956463	0.96[ASN][1000 genomes]
rs10956465	0.91[ASN][1000 genomes]
rs12546355	0.94[ASN][1000 genomes]
rs13270479	0.97[ASN][1000 genomes]
rs4289775	0.94[ASN][1000 genomes]
rs4310170	0.90[ASN][1000 genomes]
rs4448233	0.89[ASN][1000 genomes]
rs4524751	0.94[ASN][1000 genomes]
rs4524752	0.94[ASN][1000 genomes]
rs6470696	0.94[ASN][1000 genomes]
rs6470698	0.90[ASN][1000 genomes]
rs6981888	0.90[ASN][1000 genomes]
rs6982195	0.90[ASN][1000 genomes]
rs6987260	0.94[ASN][1000 genomes]
rs6996505	1.00[ASN][1000 genomes]
rs7001827	0.90[ASN][1000 genomes]
rs7007293	0.94[ASN][1000 genomes]
rs7011330	0.94[ASN][1000 genomes]
rs72609876	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7815753	0.97[ASN][1000 genomes]
rs7821655	0.92[ASN][1000 genomes]
rs7824972	0.94[ASN][1000 genomes]
rs7831436	0.97[ASN][1000 genomes]
rs7839556	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130131200-130136000	Genic enhancers	Dnd41	blood
3	chr8:130133800-130136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:130134000-130135800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:130134600-130135800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:130134800-130135800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:130135200-130136600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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