Variant report

Variant	rs10101461
Chromosome Location	chr8:50024039-50024040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090063	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094704	1.00[AMR][1000 genomes]
rs10096060	1.00[AMR][1000 genomes]
rs10096185	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096769	1.00[AMR][1000 genomes]
rs10097472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101665	1.00[AMR][1000 genomes]
rs10101898	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103245	1.00[AMR][1000 genomes]
rs10105435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106281	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109165	1.00[AMR][1000 genomes]
rs10111733	1.00[AMR][1000 genomes]
rs10112299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439339	1.00[AMR][1000 genomes]
rs16939236	1.00[AMR][1000 genomes]
rs28513475	1.00[AMR][1000 genomes]
rs28521962	1.00[AMR][1000 genomes]
rs28528093	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552792	1.00[AMR][1000 genomes]
rs28589414	1.00[AMR][1000 genomes]
rs28612086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635092	1.00[AMR][1000 genomes]
rs56790040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60355726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50020600-50025800	Weak transcription	Fetal Lung	lung
2	chr8:50023400-50026200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:50023600-50024400	Weak transcription	Stomach Mucosa	stomach
4	chr8:50023600-50025200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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