Variant report

Variant	rs10109165
Chromosome Location	chr8:49891868-49891869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090063	1.00[AMR][1000 genomes]
rs10094704	1.00[AMR][1000 genomes]
rs10096060	1.00[AMR][1000 genomes]
rs10096185	1.00[AMR][1000 genomes]
rs10096769	1.00[AMR][1000 genomes]
rs10097472	1.00[AMR][1000 genomes]
rs10100956	1.00[AMR][1000 genomes]
rs10101461	1.00[AMR][1000 genomes]
rs10101665	1.00[AMR][1000 genomes]
rs10101898	1.00[AMR][1000 genomes]
rs10102956	1.00[AMR][1000 genomes]
rs10103245	1.00[AMR][1000 genomes]
rs10105435	1.00[AMR][1000 genomes]
rs10106281	1.00[AMR][1000 genomes]
rs10111733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112299	1.00[AMR][1000 genomes]
rs13439339	1.00[AMR][1000 genomes]
rs16939236	1.00[AMR][1000 genomes]
rs28513475	1.00[AMR][1000 genomes]
rs28521962	1.00[AMR][1000 genomes]
rs28528093	1.00[AMR][1000 genomes]
rs28552792	1.00[AMR][1000 genomes]
rs28589414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612086	1.00[AMR][1000 genomes]
rs28635092	1.00[AMR][1000 genomes]
rs56790040	1.00[AMR][1000 genomes]
rs60355726	1.00[AMR][1000 genomes]
rs73678536	1.00[AMR][1000 genomes]
rs73680747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49891600-49892000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:49891600-49892200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:49891600-49892400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr8:49891600-49892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:49891600-49893000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:49891800-49892000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:49891800-49892000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:49891800-49892000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr8:49891800-49892200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:49891800-49892200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr8:49891800-49892400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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