Variant report

Variant	rs10111733
Chromosome Location	chr8:49891621-49891622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090063	1.00[AMR][1000 genomes]
rs10094704	1.00[AMR][1000 genomes]
rs10096060	1.00[AMR][1000 genomes]
rs10096185	1.00[AMR][1000 genomes]
rs10096769	1.00[AMR][1000 genomes]
rs10097472	1.00[AMR][1000 genomes]
rs10100956	1.00[AMR][1000 genomes]
rs10101461	1.00[AMR][1000 genomes]
rs10101665	1.00[AMR][1000 genomes]
rs10101898	1.00[AMR][1000 genomes]
rs10102956	1.00[AMR][1000 genomes]
rs10103245	1.00[AMR][1000 genomes]
rs10105435	1.00[AMR][1000 genomes]
rs10106281	1.00[AMR][1000 genomes]
rs10109165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112299	1.00[AMR][1000 genomes]
rs13439339	1.00[AMR][1000 genomes]
rs16939236	1.00[AMR][1000 genomes]
rs28513475	1.00[AMR][1000 genomes]
rs28521962	1.00[AMR][1000 genomes]
rs28528093	1.00[AMR][1000 genomes]
rs28552792	1.00[AMR][1000 genomes]
rs28589414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612086	1.00[AMR][1000 genomes]
rs28635092	1.00[AMR][1000 genomes]
rs56790040	1.00[AMR][1000 genomes]
rs60355726	1.00[AMR][1000 genomes]
rs73678536	1.00[AMR][1000 genomes]
rs73680747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49891600-49891800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr8:49891600-49892000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:49891600-49892200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:49891600-49892400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr8:49891600-49892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:49891600-49893000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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