Variant report

Variant	rs28521962
Chromosome Location	chr8:50019363-50019364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090063	1.00[AMR][1000 genomes]
rs10094704	1.00[AMR][1000 genomes]
rs10096060	1.00[AMR][1000 genomes]
rs10096185	1.00[AMR][1000 genomes]
rs10096769	1.00[AMR][1000 genomes]
rs10097472	1.00[AMR][1000 genomes]
rs10100956	1.00[AMR][1000 genomes]
rs10101461	1.00[AMR][1000 genomes]
rs10101665	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101898	1.00[AMR][1000 genomes]
rs10102956	1.00[AMR][1000 genomes]
rs10103245	1.00[AMR][1000 genomes]
rs10105435	1.00[AMR][1000 genomes]
rs10106281	1.00[AMR][1000 genomes]
rs10109165	1.00[AMR][1000 genomes]
rs10111733	1.00[AMR][1000 genomes]
rs10112299	1.00[AMR][1000 genomes]
rs13439339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939236	1.00[AMR][1000 genomes]
rs28513475	1.00[AMR][1000 genomes]
rs28528093	1.00[AMR][1000 genomes]
rs28552792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589414	1.00[AMR][1000 genomes]
rs28612086	1.00[AMR][1000 genomes]
rs28635092	1.00[AMR][1000 genomes]
rs28853311	0.91[AFR][1000 genomes]
rs56790040	1.00[AMR][1000 genomes]
rs60355726	1.00[AMR][1000 genomes]
rs73678536	1.00[AMR][1000 genomes]
rs73680747	1.00[AMR][1000 genomes]
rs9886551	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3383502	chr8:49991448-50020707	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50015600-50022400	Weak transcription	Gastric	stomach
2	chr8:50016200-50019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:50016200-50022400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:50016800-50022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:50018800-50022400	Enhancers	K562	blood
6	chr8:50019000-50023400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:50019200-50023600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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