Variant report
| Variant | rs28589414 |
|---|---|
| Chromosome Location | chr8:49902168-49902169 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:49895549..49898241-chr8:49900621..49903477,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10090063 | 1.00[AMR][1000 genomes] |
| rs10094704 | 1.00[AMR][1000 genomes] |
| rs10096060 | 1.00[AMR][1000 genomes] |
| rs10096185 | 1.00[AMR][1000 genomes] |
| rs10096769 | 1.00[AMR][1000 genomes] |
| rs10097472 | 1.00[AMR][1000 genomes] |
| rs10100956 | 1.00[AMR][1000 genomes] |
| rs10101461 | 1.00[AMR][1000 genomes] |
| rs10101665 | 1.00[AMR][1000 genomes] |
| rs10101898 | 1.00[AMR][1000 genomes] |
| rs10102956 | 1.00[AMR][1000 genomes] |
| rs10103245 | 1.00[AMR][1000 genomes] |
| rs10105435 | 1.00[AMR][1000 genomes] |
| rs10106281 | 1.00[AMR][1000 genomes] |
| rs10109165 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10111733 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10112299 | 1.00[AMR][1000 genomes] |
| rs13439339 | 1.00[AMR][1000 genomes] |
| rs16939236 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28513475 | 1.00[AMR][1000 genomes] |
| rs28521962 | 1.00[AMR][1000 genomes] |
| rs28528093 | 1.00[AMR][1000 genomes] |
| rs28552792 | 1.00[AMR][1000 genomes] |
| rs28612086 | 1.00[AMR][1000 genomes] |
| rs28635092 | 1.00[AMR][1000 genomes] |
| rs56790040 | 1.00[AMR][1000 genomes] |
| rs60355726 | 1.00[AMR][1000 genomes] |
| rs73678536 | 1.00[AMR][1000 genomes] |
| rs73680747 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024584 | chr8:49879137-49906780 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv6181 | chr8:49885342-49930514 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49901600-49902600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
