Variant report

Variant	rs10105435
Chromosome Location	chr8:50016215-50016216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094704	1.00[AMR][1000 genomes]
rs10096060	1.00[AMR][1000 genomes]
rs10096185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096769	1.00[AMR][1000 genomes]
rs10097472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101665	1.00[AMR][1000 genomes]
rs10101898	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103245	1.00[AMR][1000 genomes]
rs10106281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109165	1.00[AMR][1000 genomes]
rs10111733	1.00[AMR][1000 genomes]
rs10112299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439339	1.00[AMR][1000 genomes]
rs16939236	1.00[AMR][1000 genomes]
rs28513475	1.00[AMR][1000 genomes]
rs28521962	1.00[AMR][1000 genomes]
rs28528093	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552792	1.00[AMR][1000 genomes]
rs28589414	1.00[AMR][1000 genomes]
rs28612086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635092	1.00[AMR][1000 genomes]
rs56790040	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60355726	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678536	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3383502	chr8:49991448-50020707	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50015600-50022400	Weak transcription	Gastric	stomach
2	chr8:50016000-50016800	Enhancers	HMEC	breast
3	chr8:50016200-50016600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:50016200-50016800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:50016200-50016800	Enhancers	NHEK	skin
6	chr8:50016200-50019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:50016200-50022400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links