Variant report

Variant	rs10114696
Chromosome Location	chr9:85863091-85863092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10115475	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10120987	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1056476	0.80[CEU][hapmap];0.86[YRI][hapmap]
rs10867955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11788105	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11794740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12553212	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13297573	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13302766	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28772597	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28829626	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28890897	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4448364	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559716	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7029645	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7036410	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7046601	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7469571	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7863072	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
3	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
5	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
6	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
8	chr9:85854800-85867400	Weak transcription	HepG2	liver
9	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
11	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
12	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:85858600-85865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:85858600-85866400	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85859400-85864200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:85861200-85865800	Weak transcription	Aorta	Aorta
18	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
19	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:85861600-85868000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:85862600-85863200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:85862800-85863200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:85862800-85863200	ZNF genes & repeats	Esophagus	oesophagus
24	chr9:85862800-85863400	Genic enhancers	Left Ventricle	heart
25	chr9:85863000-85863200	ZNF genes & repeats	Pancreas	Pancrea
26	chr9:85863000-85863400	ZNF genes & repeats	Gastric	stomach
27	chr9:85863000-85873000	Weak transcription	Fetal Heart	heart

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