Variant report

Variant	rs11788105
Chromosome Location	chr9:85855812-85855813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114696	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10115475	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10120987	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10867955	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11794740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12553212	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13297573	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13302766	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28772597	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28829626	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28890897	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4448364	0.84[ASN][1000 genomes]
rs6559716	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7029645	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7036410	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7046601	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7469571	0.87[ASN][1000 genomes]
rs7863072	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:85853400-85856200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:85853800-85856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:85854000-85856400	Enhancers	HUVEC	blood vessel
8	chr9:85854400-85857000	Weak transcription	Left Ventricle	heart
9	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
10	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
11	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
12	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
14	chr9:85854600-85857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
16	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
18	chr9:85854800-85856200	Weak transcription	Fetal Lung	lung
19	chr9:85854800-85856200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:85854800-85867400	Weak transcription	HepG2	liver
22	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:85855000-85856000	Enhancers	Fetal Heart	heart
24	chr9:85855000-85857800	Weak transcription	Liver	Liver
25	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
26	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
27	chr9:85855200-85857800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:85855600-85856000	ZNF genes & repeats	Psoas Muscle	Psoas
29	chr9:85855800-85856000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:85855800-85856000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr9:85855800-85856200	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr9:85855800-85857400	Weak transcription	Fetal Brain Female	brain

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