Variant report

Variant	rs11794740
Chromosome Location	chr9:85836317-85836318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10115475	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120987	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867955	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788105	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12553212	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13297573	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13302766	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28772597	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28829626	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28890897	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448364	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559716	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7029645	0.90[ASN][1000 genomes]
rs7036410	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7046601	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469571	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863072	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85834800-85836600	Flanking Active TSS	HUVEC	blood vessel
2	chr9:85835000-85836400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:85835200-85836600	Enhancers	NH-A	brain
4	chr9:85835200-85836600	Enhancers	Osteobl	bone
5	chr9:85835200-85836800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:85835200-85836800	Enhancers	Adipose Nuclei	Adipose
7	chr9:85835200-85837400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:85835400-85836400	Enhancers	HepG2	liver
9	chr9:85835400-85836600	Enhancers	Stomach Mucosa	stomach
10	chr9:85835400-85836600	Enhancers	HMEC	breast
11	chr9:85835400-85836800	Weak transcription	Left Ventricle	heart
12	chr9:85835400-85836800	Weak transcription	Right Ventricle	heart
13	chr9:85835400-85837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:85835600-85837200	Enhancers	Fetal Heart	heart
15	chr9:85836000-85836400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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