Variant report

Variant	rs7029645
Chromosome Location	chr9:85870546-85870547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10114696	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10115475	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120987	0.88[ASN][1000 genomes]
rs10867955	0.90[ASN][1000 genomes]
rs11788105	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11794740	0.90[ASN][1000 genomes]
rs12553212	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13297573	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13302766	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28772597	0.90[ASN][1000 genomes]
rs28829626	0.84[ASN][1000 genomes]
rs28890897	0.90[ASN][1000 genomes]
rs6559716	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036410	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7046601	0.90[ASN][1000 genomes]
rs7469571	0.82[ASN][1000 genomes]
rs7863072	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
5	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:85863000-85873000	Weak transcription	Fetal Heart	heart
7	chr9:85863200-85873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:85866000-85873000	Weak transcription	Left Ventricle	heart
9	chr9:85866200-85873600	Weak transcription	Right Ventricle	heart
10	chr9:85866200-85913000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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