Variant report

Variant	rs10120987
Chromosome Location	chr9:85835166-85835167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:85834296..85835171-chr9:85845740..85846677,8	MCF-7	breast:
2	chr9:85576162..85576940-chr9:85834338..85835195,3	MCF-7	breast:
3	chr9:85813794..85816602-chr9:85833659..85835490,2	MCF-7	breast:
4	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:
5	chr9:85834525..85835178-chr9:86153175..86154166,3	MCF-7	breast:
6	chr9:85834621..85835782-chr9:86211520..86212262,3	MCF-7	breast:
7	chr9:85832727..85836639-chr9:86319596..86323973,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172159	Chromatin interaction
ENSG00000254473	Chromatin interaction
ENSG00000251776	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114696	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10115475	0.88[ASN][1000 genomes]
rs10867955	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788105	0.92[ASN][1000 genomes]
rs11794740	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553212	0.87[ASN][1000 genomes]
rs13297573	0.82[ASN][1000 genomes]
rs13302766	0.82[ASN][1000 genomes]
rs28772597	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28829626	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28890897	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4448364	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6559716	0.87[ASN][1000 genomes]
rs7029645	0.88[ASN][1000 genomes]
rs7036410	0.81[ASN][1000 genomes]
rs7046601	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7469571	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7863072	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85833600-85835600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr9:85833800-85835200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:85834000-85835200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:85834000-85835200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:85834000-85835200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr9:85834000-85835200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:85834000-85835200	Active TSS	Brain Substantia Nigra	brain
8	chr9:85834000-85835200	Active TSS	Colonic Mucosa	Colon
9	chr9:85834000-85835200	Active TSS	NHLF	lung
10	chr9:85834000-85835400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:85834000-85835400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr9:85834200-85835200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr9:85834200-85835200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr9:85834200-85835200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr9:85834200-85835200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:85834200-85835200	Active TSS	Gastric	stomach
17	chr9:85834200-85835200	Active TSS	Stomach Smooth Muscle	stomach
18	chr9:85834200-85835200	Flanking Active TSS	Hela-S3	cervix
19	chr9:85834200-85835200	Flanking Active TSS	NH-A	brain
20	chr9:85834200-85835400	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr9:85834200-85835400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:85834400-85835200	Active TSS	Fetal Brain Male	brain
23	chr9:85834400-85835200	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr9:85834400-85835400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr9:85834600-85835200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr9:85834600-85835200	Bivalent/Poised TSS	HSMM	muscle
27	chr9:85834800-85835200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:85834800-85835200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:85834800-85835200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:85834800-85835200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:85834800-85835200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr9:85834800-85835200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:85834800-85835200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:85834800-85835200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:85834800-85835200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:85834800-85835200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:85834800-85835200	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr9:85834800-85835200	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr9:85834800-85835200	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr9:85834800-85835200	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr9:85834800-85835200	Flanking Active TSS	Fetal Brain Female	brain
42	chr9:85834800-85835200	Flanking Active TSS	Fetal Lung	lung
43	chr9:85834800-85835200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr9:85834800-85835200	Flanking Bivalent TSS/Enh	A549	lung
45	chr9:85834800-85835200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr9:85834800-85835200	Flanking Active TSS	NHDF-Ad	bronchial
47	chr9:85834800-85835200	Flanking Active TSS	Osteobl	bone
48	chr9:85834800-85835400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:85834800-85835400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
50	chr9:85834800-85835400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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