Variant report

Variant	rs12553212
Chromosome Location	chr9:85866618-85866619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10114696	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10115475	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10120987	0.87[ASN][1000 genomes]
rs10867955	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11788105	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11794740	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13297573	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13302766	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28772597	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28829626	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28890897	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559716	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029645	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036410	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7046601	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7469571	0.81[ASN][1000 genomes]
rs7863072	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85867400	Weak transcription	HepG2	liver
2	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
7	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:85861600-85868000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:85863000-85873000	Weak transcription	Fetal Heart	heart
10	chr9:85863200-85868000	Weak transcription	Pancreas	Pancrea
11	chr9:85863200-85873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:85866000-85873000	Weak transcription	Left Ventricle	heart
13	chr9:85866200-85873600	Weak transcription	Right Ventricle	heart
14	chr9:85866200-85913000	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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