Variant report

Variant	rs28772597
Chromosome Location	chr9:85843471-85843472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114696	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10115475	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120987	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867955	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788105	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11794740	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553212	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13297573	0.84[ASN][1000 genomes]
rs13302766	0.84[ASN][1000 genomes]
rs28829626	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28890897	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448364	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559716	0.89[ASN][1000 genomes]
rs7029645	0.90[ASN][1000 genomes]
rs7036410	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7046601	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469571	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863072	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85843400-85843800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:85843400-85843800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:85843400-85844000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:85843400-85844000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr9:85843400-85844000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:85843400-85844000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr9:85843400-85844000	Active TSS	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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