Variant report

Variant	rs10128665
Chromosome Location	chr11:73308978-73308979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:
2	chr11:73289699..73292318-chr11:73308150..73310462,2	K562	blood:
3	chr11:73308527..73310864-chr11:73370877..73373752,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021300	Chromatin interaction
ENSG00000231726	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	1.00[AMR][1000 genomes]
rs1054726	1.00[AMR][1000 genomes]
rs11235732	1.00[AMR][1000 genomes]
rs11235744	1.00[AMR][1000 genomes]
rs11235750	1.00[AMR][1000 genomes]
rs11235756	1.00[AMR][1000 genomes]
rs11235758	1.00[AMR][1000 genomes]
rs11235766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.95[AFR][1000 genomes]
rs11235804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270051	0.82[AFR][1000 genomes]
rs12273771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274281	1.00[AMR][1000 genomes]
rs12274787	1.00[AMR][1000 genomes]
rs12277410	1.00[AMR][1000 genomes]
rs12279375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	1.00[AMR][1000 genomes]
rs12295567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3384593	chr11:73307854-73310302	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73307400-73310200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:73307800-73310400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:73307800-73310400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:73308000-73309000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr11:73308000-73310200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:73308000-73310400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:73308200-73309000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr11:73308200-73309800	Active TSS	Fetal Brain Female	brain
9	chr11:73308200-73310200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr11:73308200-73310200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:73308200-73310200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:73308200-73310400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:73308400-73309800	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:73308400-73309800	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:73308400-73310000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:73308400-73310000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:73308400-73310000	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr11:73308400-73310000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:73308400-73310000	Active TSS	Aorta	Aorta
20	chr11:73308400-73310000	Active TSS	Small Intestine	intestine
21	chr11:73308400-73310000	Bivalent/Poised TSS	HepG2	liver
22	chr11:73308400-73310200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:73308400-73310200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:73308400-73310200	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr11:73308400-73310200	Active TSS	Brain Germinal Matrix	brain
26	chr11:73308400-73310200	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr11:73308400-73310200	Active TSS	NHDF-Ad	bronchial
28	chr11:73308400-73310200	Active TSS	NHLF	lung
29	chr11:73308400-73310400	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr11:73308400-73310400	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr11:73308400-73310400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:73308400-73310400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:73308400-73310400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:73308400-73310400	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr11:73308400-73310400	Active TSS	Psoas Muscle	Psoas
36	chr11:73308400-73310400	Active TSS	HSMMtube	muscle
37	chr11:73308400-73311000	Active TSS	GM12878-XiMat	blood
38	chr11:73308600-73309200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:73308600-73309400	Weak transcription	Fetal Brain Male	brain
40	chr11:73308600-73309600	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr11:73308600-73309600	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr11:73308600-73309800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:73308600-73309800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:73308600-73309800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:73308600-73309800	Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr11:73308600-73309800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:73308600-73309800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr11:73308600-73309800	Active TSS	Fetal Lung	lung
49	chr11:73308600-73309800	Active TSS	Hela-S3	cervix
50	chr11:73308600-73309800	Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links