Variant report

Variant	rs11235804
Chromosome Location	chr11:73266859-73266860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73265451..73268306-chr11:73275988..73278927,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1054726	1.00[AMR][1000 genomes]
rs11235732	1.00[AMR][1000 genomes]
rs11235744	1.00[AMR][1000 genomes]
rs11235750	1.00[AMR][1000 genomes]
rs11235756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235758	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.98[AFR][1000 genomes]
rs11235808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270051	0.84[AFR][1000 genomes]
rs12273771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274787	1.00[AMR][1000 genomes]
rs12277410	1.00[AMR][1000 genomes]
rs12279375	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279753	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	1.00[AMR][1000 genomes]
rs12295567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377500	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
2	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:73250200-73278800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
7	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:73258800-73278000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:73262200-73281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:73262600-73276800	Weak transcription	Brain Germinal Matrix	brain
11	chr11:73263200-73269000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:73263200-73276000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:73263400-73270800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:73263800-73288800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:73264200-73276800	Weak transcription	Hela-S3	cervix
17	chr11:73264600-73287000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:73264800-73276000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:73265400-73287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:73265600-73267200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73265600-73267200	Enhancers	HepG2	liver
22	chr11:73265800-73267200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:73265800-73267200	Strong transcription	Primary T cells from cord blood	blood
24	chr11:73265800-73267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:73265800-73267400	Enhancers	Fetal Heart	heart
26	chr11:73265800-73267400	Enhancers	Psoas Muscle	Psoas
27	chr11:73265800-73267400	Enhancers	Right Atrium	heart
28	chr11:73265800-73267400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:73266000-73267000	Enhancers	Brain Anterior Caudate	brain
30	chr11:73266000-73267000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:73266400-73271000	Weak transcription	Pancreas	Pancrea
32	chr11:73266400-73274400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:73266400-73280000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:73266600-73267800	Weak transcription	Right Ventricle	heart
35	chr11:73266600-73275000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
37	chr11:73266800-73271000	Weak transcription	Left Ventricle	heart
38	chr11:73266800-73271000	Weak transcription	Ovary	ovary
39	chr11:73266800-73275000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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