Variant report

Variant	rs12287264
Chromosome Location	chr11:73311662-73311663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:73311460-73311664	K562	blood:	n/a	chr11:73311592-73311605 chr11:73311595-73311602 chr11:73311591-73311604
2	RCOR1	chr11:73311402-73311673	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:73303459..73306739-chr11:73310819..73313013,3	K562	blood:
2	chr11:73309644..73312561-chr11:73314444..73315980,2	MCF-7	breast:
3	chr11:73304614..73306739-chr11:73310819..73312531,2	K562	blood:

Variant related genes	Relation type
FAM168A	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	1.00[AMR][1000 genomes]
rs10128665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1054726	1.00[AMR][1000 genomes]
rs11235732	1.00[AMR][1000 genomes]
rs11235744	1.00[AMR][1000 genomes]
rs11235750	1.00[AMR][1000 genomes]
rs11235756	1.00[AMR][1000 genomes]
rs11235758	1.00[AMR][1000 genomes]
rs11235766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.95[AFR][1000 genomes]
rs11235804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270051	0.82[AFR][1000 genomes]
rs12273771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274281	1.00[AMR][1000 genomes]
rs12274787	1.00[AMR][1000 genomes]
rs12277410	1.00[AMR][1000 genomes]
rs12279375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	1.00[AMR][1000 genomes]
rs12295567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73310000-73317600	Weak transcription	Spleen	Spleen
2	chr11:73310400-73312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:73310400-73312200	Weak transcription	Psoas Muscle	Psoas
4	chr11:73310400-73313000	Weak transcription	Right Ventricle	heart
5	chr11:73310400-73315800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:73310600-73312200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links