Variant report

Variant	rs11823115
Chromosome Location	chr11:73177839-73177840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73176153..73178479-chr11:73179417..73181736,2	MCF-7	breast:
2	chr11:73112642..73115479-chr11:73176315..73178999,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054965	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047427	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128665	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1054726	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235732	1.00[AMR][1000 genomes]
rs11235735	0.81[AFR][1000 genomes]
rs11235744	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235756	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235758	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.88[AFR][1000 genomes]
rs11235804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235808	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819847	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822755	1.00[YRI][hapmap]
rs11822862	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274281	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274787	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277410	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279375	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281470	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287264	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287335	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377500	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:73141800-73181400	Weak transcription	Dnd41	blood
5	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
7	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:73150400-73178800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:73155600-73181200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:73161200-73180600	Weak transcription	Fetal Lung	lung
13	chr11:73163600-73179400	Weak transcription	Lung	lung
14	chr11:73163600-73179800	Weak transcription	Aorta	Aorta
15	chr11:73163600-73180000	Weak transcription	Fetal Brain Female	brain
16	chr11:73163600-73180800	Weak transcription	Fetal Intestine Small	intestine
17	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
18	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:73166400-73178600	Weak transcription	Right Atrium	heart
20	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
21	chr11:73170400-73185800	Weak transcription	HepG2	liver
22	chr11:73172400-73178400	Weak transcription	Right Ventricle	heart
23	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:73173400-73179000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:73173600-73181200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:73173800-73184400	Weak transcription	Spleen	Spleen
27	chr11:73174200-73186800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:73174600-73187800	Weak transcription	Primary T cells from cord blood	blood
29	chr11:73175000-73179600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:73175800-73179800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:73176000-73180600	Enhancers	Adipose Nuclei	Adipose
32	chr11:73176000-73180600	Enhancers	Brain Hippocampus Middle	brain
33	chr11:73176000-73180600	Enhancers	Brain Substantia Nigra	brain
34	chr11:73176200-73178600	Enhancers	Colon Smooth Muscle	Colon
35	chr11:73176200-73180400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:73176400-73178600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:73176400-73186600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:73176600-73178400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:73177000-73178000	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:73177000-73179800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:73177000-73189800	Weak transcription	Fetal Heart	heart
42	chr11:73177200-73178000	Enhancers	Primary hematopoietic stem cells	blood
43	chr11:73177200-73178000	Enhancers	Fetal Muscle Leg	muscle
44	chr11:73177200-73178200	Enhancers	Left Ventricle	heart
45	chr11:73177200-73178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:73177200-73179000	Weak transcription	Brain Anterior Caudate	brain
47	chr11:73177200-73179400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:73177400-73178200	Weak transcription	Primary B cells from cord blood	blood
49	chr11:73177400-73178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:73177400-73178400	Weak transcription	Psoas Muscle	Psoas

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