Variant report

Variant	rs13377500
Chromosome Location	chr11:73175498-73175499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047427	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1054726	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235732	1.00[AMR][1000 genomes]
rs11235744	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235750	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235756	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235758	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.82[AFR][1000 genomes]
rs11235804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235808	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819847	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822755	0.89[YRI][hapmap]
rs11822862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273771	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274281	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274787	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs12277410	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279375	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279753	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281470	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287335	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295567	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73138000-73176800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
5	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:73141800-73181400	Weak transcription	Dnd41	blood
7	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
9	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:73150000-73175800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:73150400-73178800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:73155600-73181200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:73161200-73180600	Weak transcription	Fetal Lung	lung
16	chr11:73161400-73177200	Weak transcription	Left Ventricle	heart
17	chr11:73163600-73179400	Weak transcription	Lung	lung
18	chr11:73163600-73179800	Weak transcription	Aorta	Aorta
19	chr11:73163600-73180000	Weak transcription	Fetal Brain Female	brain
20	chr11:73163600-73180800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
22	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:73166400-73178600	Weak transcription	Right Atrium	heart
24	chr11:73166600-73176000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:73167000-73176000	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:73167000-73176000	Weak transcription	Brain Substantia Nigra	brain
27	chr11:73167600-73176200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:73168000-73175600	Weak transcription	Brain Anterior Caudate	brain
29	chr11:73168000-73176200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
31	chr11:73170400-73185800	Weak transcription	HepG2	liver
32	chr11:73172400-73177400	Enhancers	Osteobl	bone
33	chr11:73172400-73178400	Weak transcription	Right Ventricle	heart
34	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:73173000-73177000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:73173400-73175600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:73173400-73176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:73173400-73179000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:73173600-73181200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:73173800-73175600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:73173800-73176000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:73173800-73176000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:73173800-73176600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:73173800-73177200	Weak transcription	Liver	Liver
45	chr11:73173800-73177200	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:73173800-73177600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:73173800-73184400	Weak transcription	Spleen	Spleen
48	chr11:73174000-73177200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:73174000-73177200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:73174200-73175800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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