Variant report

Variant	rs12274281
Chromosome Location	chr11:73139782-73139783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047427	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128665	1.00[AMR][1000 genomes]
rs1054726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235732	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235735	0.89[AFR][1000 genomes]
rs11235744	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235750	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235756	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235758	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235781	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235782	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235785	0.80[AFR][1000 genomes]
rs11235804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235808	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235817	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11819847	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822755	1.00[YRI][hapmap]
rs11822862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273771	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274787	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277410	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279375	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279753	1.00[AMR][1000 genomes]
rs12281470	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282576	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285337	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286840	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286967	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287264	1.00[AMR][1000 genomes]
rs12287335	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290126	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295567	1.00[AMR][1000 genomes]
rs13377500	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132094	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132131	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
4	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
6	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
7	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
11	chr11:73122800-73149600	Weak transcription	Gastric	stomach
12	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:73124000-73140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
15	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:73129600-73140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:73129600-73147000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:73129600-73149400	Weak transcription	Liver	Liver
19	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:73129800-73141200	Weak transcription	Fetal Brain Male	brain
21	chr11:73130400-73141200	Weak transcription	Pancreas	Pancrea
22	chr11:73130600-73141000	Weak transcription	Thymus	Thymus
23	chr11:73130800-73140000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:73130800-73140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:73130800-73150000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:73131000-73140400	Weak transcription	Fetal Intestine Large	intestine
27	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:73131200-73142800	Weak transcription	Brain Germinal Matrix	brain
29	chr11:73131200-73143200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:73131200-73149800	Weak transcription	Fetal Brain Female	brain
31	chr11:73131400-73141200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:73131600-73140000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:73131600-73145600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:73131800-73140000	Weak transcription	Dnd41	blood
35	chr11:73131800-73140200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:73131800-73141000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:73132000-73143400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:73132000-73145200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:73132000-73150200	Weak transcription	HepG2	liver
40	chr11:73132600-73162600	Weak transcription	Primary B cells from cord blood	blood
41	chr11:73132800-73139800	Weak transcription	Primary T cells from cord blood	blood
42	chr11:73133000-73140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:73133000-73141000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:73133000-73146000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:73133200-73140600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:73133200-73145600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:73133200-73147000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:73134800-73141000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:73136000-73140400	Weak transcription	NHEK	skin
50	chr11:73136800-73141000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links