Variant report

Variant	rs12274787
Chromosome Location	chr11:73118062-73118063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73111799..73116221-chr11:73117237..73120913,5	K562	blood:
2	chr11:73117383..73120089-chr11:73130549..73132139,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047427	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082565	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128665	1.00[AMR][1000 genomes]
rs1054726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235732	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235735	0.87[AFR][1000 genomes]
rs11235744	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235756	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235758	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235766	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235769	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235774	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235777	1.00[AMR][1000 genomes]
rs11235781	1.00[AMR][1000 genomes]
rs11235782	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs11235804	1.00[AMR][1000 genomes]
rs11235808	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs11235817	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs11819847	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs11822755	0.94[YRI][hapmap]
rs11822862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823113	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823115	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269810	1.00[AMR][1000 genomes]
rs12273771	1.00[AMR][1000 genomes]
rs12274281	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277410	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279375	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279753	1.00[AMR][1000 genomes]
rs12281470	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282576	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12285337	1.00[AMR][1000 genomes]
rs12286840	1.00[AMR][1000 genomes]
rs12286967	1.00[AMR][1000 genomes]
rs12287264	1.00[AMR][1000 genomes]
rs12287335	1.00[AMR][1000 genomes]
rs12290126	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295567	1.00[AMR][1000 genomes]
rs13377500	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17132094	1.00[AMR][1000 genomes]
rs17132131	0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73096200-73130200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:73098600-73126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:73098600-73132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:73099600-73119200	Weak transcription	Fetal Lung	lung
7	chr11:73100000-73118400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73100600-73118600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73101200-73124800	Weak transcription	Psoas Muscle	Psoas
10	chr11:73103600-73118400	Weak transcription	Esophagus	oesophagus
11	chr11:73104600-73123400	Strong transcription	Fetal Stomach	stomach
12	chr11:73104800-73122600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:73106400-73120200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:73110000-73120000	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:73110600-73121600	Weak transcription	NHDF-Ad	bronchial
16	chr11:73110600-73123200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:73110800-73123000	Weak transcription	HUVEC	blood vessel
18	chr11:73110800-73123200	Weak transcription	NH-A	brain
19	chr11:73110800-73124000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:73111400-73123200	Strong transcription	Thymus	Thymus
21	chr11:73112800-73120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73112800-73121200	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:73112800-73123400	Strong transcription	Brain Germinal Matrix	brain
24	chr11:73113000-73118800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:73113000-73119000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:73113000-73126200	Weak transcription	Small Intestine	intestine
27	chr11:73113400-73125000	Weak transcription	Right Atrium	heart
28	chr11:73113600-73118400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:73113600-73132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:73113800-73118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:73113800-73120600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:73113800-73121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:73113800-73122800	Strong transcription	Fetal Intestine Small	intestine
34	chr11:73114200-73120200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:73114600-73123000	Strong transcription	Fetal Thymus	thymus
36	chr11:73114600-73125200	Strong transcription	Primary T cells from cord blood	blood
37	chr11:73114800-73122800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:73115000-73121200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:73115200-73120600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:73115200-73126200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:73115200-73132200	Weak transcription	Fetal Heart	heart
42	chr11:73115200-73132400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
44	chr11:73115400-73121400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:73115600-73122800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:73115800-73118800	Strong transcription	HMEC	breast
47	chr11:73115800-73120800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:73115800-73121000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:73115800-73121000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:73115800-73121000	Strong transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links