Variant report

Variant	rs10138787
Chromosome Location	chr14:103956182-103956183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129401	1.00[AMR][1000 genomes]
rs10129621	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130887	0.84[LWK][hapmap];0.96[MKK][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10134819	1.00[AMR][1000 genomes]
rs10139205	1.00[AMR][1000 genomes]
rs10145934	0.80[LWK][hapmap];0.93[MKK][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10149860	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs11623869	0.94[YRI][hapmap]
rs12100454	1.00[AMR][1000 genomes]
rs28524598	1.00[AMR][1000 genomes]
rs28701683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	1.00[AMR][1000 genomes]
rs56324843	1.00[AMR][1000 genomes]
rs56666624	1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs58869129	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733762	1.00[AMR][1000 genomes]
rs7141712	0.83[LWK][hapmap];0.96[MKK][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148427	1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157565	0.83[MKK][hapmap]
rs7158326	1.00[AMR][1000 genomes]
rs7158972	1.00[AMR][1000 genomes]
rs73353046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359246	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359263	1.00[AMR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	1.00[AMR][1000 genomes]
rs73361323	1.00[AMR][1000 genomes]
rs73361328	1.00[AMR][1000 genomes]
rs73361331	1.00[AMR][1000 genomes]
rs73361334	1.00[AMR][1000 genomes]
rs73361335	1.00[AMR][1000 genomes]
rs73361345	1.00[AMR][1000 genomes]
rs73361349	1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	1.00[AMR][1000 genomes]
rs8009277	1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
3	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	esv1835815	chr14:103942991-103989757	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
5	nsv1044967	chr14:103954727-104007051	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv1807091	chr14:103956182-104020454	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv1835824	chr14:103956182-104020454	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103923200-103976800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:103923600-103967000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:103924000-103957400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:103925600-103958400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:103926800-103963400	Strong transcription	Fetal Intestine Large	intestine
6	chr14:103927800-103979800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:103939200-103966200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:103942800-103957200	Weak transcription	Brain Angular Gyrus	brain
9	chr14:103942800-103966400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:103943200-103969200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:103943400-103958200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:103944400-103957400	Weak transcription	Colonic Mucosa	Colon
13	chr14:103944400-103962200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:103945400-103962800	Strong transcription	Thymus	Thymus
15	chr14:103945600-103957400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:103946400-103964400	Strong transcription	Fetal Thymus	thymus
17	chr14:103946800-103957200	Weak transcription	Pancreas	Pancrea
18	chr14:103946800-103963800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr14:103947200-103963800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:103947600-103957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:103947600-103966600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:103947600-103967400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:103947600-103972800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr14:103947600-103980000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr14:103947800-103966000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:103948000-103957200	Weak transcription	K562	blood
27	chr14:103948600-103961000	Weak transcription	A549	lung
28	chr14:103949000-103958000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:103950400-103957200	Weak transcription	Brain Substantia Nigra	brain
30	chr14:103950400-103957200	Weak transcription	HUVEC	blood vessel
31	chr14:103950400-103961400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:103950400-103962200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:103950400-103978800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:103950600-103966600	Strong transcription	Fetal Stomach	stomach
35	chr14:103950600-103979000	Strong transcription	Fetal Intestine Small	intestine
36	chr14:103951200-103966000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr14:103951600-103960000	Strong transcription	NHEK	skin
38	chr14:103951600-103972600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:103951600-103972800	Strong transcription	Dnd41	blood
40	chr14:103951600-103976600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:103951800-103956400	Strong transcription	Primary B cells from cord blood	blood
42	chr14:103951800-103959800	Strong transcription	HSMM	muscle
43	chr14:103951800-103960000	Strong transcription	Hela-S3	cervix
44	chr14:103951800-103960000	Strong transcription	HMEC	breast
45	chr14:103951800-103962800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:103951800-103963000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:103952200-103962200	Strong transcription	Left Ventricle	heart
48	chr14:103952200-103966600	Weak transcription	Stomach Mucosa	stomach
49	chr14:103952400-103962600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:103952400-103968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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