Variant report

Variant	rs73359246
Chromosome Location	chr14:103966751-103966752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:103957288..103960022-chr14:103965269..103968213,3	MCF-7	breast:
2	chr14:103966734..103968731-chr14:104012541..104016540,3	MCF-7	breast:
3	chr14:103966239..103967223-chr14:104012598..104013775,9	K562	blood:
4	chr14:103799655..103801928-chr14:103966389..103970885,4	MCF-7	breast:
5	chr14:103966209..103967132-chr14:104012771..104013734,5	MCF-7	breast:
6	chr14:103965301..103968285-chr14:103970025..103972869,2	MCF-7	breast:
7	chr14:103651444..103652340-chr14:103966099..103966889,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000075413	Chromatin interaction
ENSG00000100664	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10129401	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130887	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134819	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs12100454	1.00[AMR][1000 genomes]
rs28524598	1.00[AMR][1000 genomes]
rs28701683	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56324843	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56666624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs58869129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733762	1.00[AMR][1000 genomes]
rs7141712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158972	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353046	1.00[AMR][1000 genomes]
rs73359248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359284	0.87[AFR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	1.00[AMR][1000 genomes]
rs73361323	1.00[AMR][1000 genomes]
rs73361328	1.00[AMR][1000 genomes]
rs73361331	1.00[AMR][1000 genomes]
rs73361334	1.00[AMR][1000 genomes]
rs73361335	1.00[AMR][1000 genomes]
rs73361345	1.00[AMR][1000 genomes]
rs73361349	1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8009277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
3	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	esv1835815	chr14:103942991-103989757	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
5	nsv1044967	chr14:103954727-104007051	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv1807091	chr14:103956182-104020454	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv1835824	chr14:103956182-104020454	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103923200-103976800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:103923600-103967000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:103927800-103979800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:103943200-103969200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:103947600-103967400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:103947600-103972800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:103947600-103980000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:103950400-103978800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:103950600-103979000	Strong transcription	Fetal Intestine Small	intestine
10	chr14:103951600-103972600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:103951600-103972800	Strong transcription	Dnd41	blood
12	chr14:103951600-103976600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:103952400-103968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:103953000-103972800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:103953800-103977200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr14:103953800-103978800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr14:103954000-103967000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:103955000-103967400	Weak transcription	Aorta	Aorta
19	chr14:103955200-103967800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:103956000-103969000	Weak transcription	Small Intestine	intestine
21	chr14:103956600-103966800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:103958200-103978200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:103958800-103980400	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:103959400-103968400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:103959800-103967600	Weak transcription	Colonic Mucosa	Colon
26	chr14:103960000-103967000	Weak transcription	Esophagus	oesophagus
27	chr14:103960000-103978000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:103961800-103968600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:103962400-103966800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:103962400-103967200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:103962400-103967600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:103962600-103967200	Weak transcription	Gastric	stomach
33	chr14:103962600-103967400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:103962600-103967600	Weak transcription	Right Ventricle	heart
35	chr14:103962600-103968000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:103962600-103968200	Weak transcription	Psoas Muscle	Psoas
37	chr14:103962600-103978400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:103962600-103979000	Weak transcription	Right Atrium	heart
39	chr14:103962800-103967200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:103963200-103967000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:103963200-103967200	Weak transcription	Brain Germinal Matrix	brain
42	chr14:103963600-103978000	Strong transcription	Placenta	Placenta
43	chr14:103964200-103966800	Weak transcription	Hela-S3	cervix
44	chr14:103964400-103966800	Weak transcription	Fetal Thymus	thymus
45	chr14:103964600-103967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:103965000-103966800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:103965000-103971800	Strong transcription	Primary B cells from cord blood	blood
48	chr14:103965000-103972200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:103965200-103972000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr14:103965200-103978600	Strong transcription	Thymus	Thymus

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