Variant report

Variant	rs73353046
Chromosome Location	chr14:103926984-103926985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:103923899..103929898-chr14:103931403..103935760,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075413	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10129401	1.00[AMR][1000 genomes]
rs10129621	1.00[AMR][1000 genomes]
rs10130887	1.00[AMR][1000 genomes]
rs10134819	1.00[AMR][1000 genomes]
rs10138787	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145934	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149860	1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs12100454	1.00[AMR][1000 genomes]
rs28524598	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56324843	1.00[AMR][1000 genomes]
rs56666624	1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs58869129	1.00[AMR][1000 genomes]
rs61733762	1.00[AMR][1000 genomes]
rs7141712	1.00[AMR][1000 genomes]
rs7148427	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	1.00[AMR][1000 genomes]
rs7158326	1.00[AMR][1000 genomes]
rs7158972	1.00[AMR][1000 genomes]
rs73359246	1.00[AMR][1000 genomes]
rs73359248	1.00[AMR][1000 genomes]
rs73359263	1.00[AMR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	1.00[AMR][1000 genomes]
rs73361323	1.00[AMR][1000 genomes]
rs73361328	1.00[AMR][1000 genomes]
rs73361331	1.00[AMR][1000 genomes]
rs73361334	1.00[AMR][1000 genomes]
rs73361335	1.00[AMR][1000 genomes]
rs73361345	1.00[AMR][1000 genomes]
rs73361349	1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	1.00[AMR][1000 genomes]
rs8009277	1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103879000-103941400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:103894600-103927400	Weak transcription	Hela-S3	cervix
3	chr14:103899200-103934400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:103901600-103928600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:103912200-103927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:103912200-103928400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:103912200-103930000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:103912200-103942200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:103912400-103928600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:103912400-103931800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:103912600-103928400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:103912600-103929600	Weak transcription	Brain Substantia Nigra	brain
13	chr14:103912600-103932000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:103913000-103929000	Weak transcription	Brain Germinal Matrix	brain
15	chr14:103913200-103929000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:103913200-103929000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:103914200-103928600	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:103914800-103927800	Weak transcription	Aorta	Aorta
19	chr14:103914800-103928600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:103914800-103929200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:103914800-103929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:103916800-103929000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr14:103918200-103928800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr14:103918200-103929200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:103918600-103927800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:103918600-103941400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr14:103918800-103928600	Weak transcription	Fetal Lung	lung
28	chr14:103919600-103928800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:103919800-103928600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:103920000-103929000	Weak transcription	Colonic Mucosa	Colon
31	chr14:103920200-103928400	Weak transcription	NHDF-Ad	bronchial
32	chr14:103920400-103928400	Weak transcription	Fetal Brain Female	brain
33	chr14:103920400-103928400	Weak transcription	Placenta	Placenta
34	chr14:103920600-103927600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:103920600-103927800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr14:103920600-103928400	Weak transcription	Ovary	ovary
37	chr14:103920600-103928600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:103920600-103929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:103922400-103939200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:103922400-103955000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:103922800-103928000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:103922800-103928400	Weak transcription	Lung	lung
43	chr14:103922800-103940800	Weak transcription	Fetal Heart	heart
44	chr14:103923000-103927800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:103923000-103928000	Weak transcription	Pancreas	Pancrea
46	chr14:103923000-103928000	Weak transcription	Spleen	Spleen
47	chr14:103923000-103928400	Weak transcription	Fetal Kidney	kidney
48	chr14:103923000-103928400	Weak transcription	Right Ventricle	heart
49	chr14:103923000-103928600	Weak transcription	Brain Anterior Caudate	brain
50	chr14:103923000-103928600	Weak transcription	Gastric	stomach

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