Variant report

Variant	rs73361345
Chromosome Location	chr14:104040632-104040633
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104038958..104041792-chr14:104093403..104095893,2	MCF-7	breast:
2	chr14:104040497..104046116-chr14:104179984..104183762,7	MCF-7	breast:
3	chr14:104040559..104042718-chr14:104094686..104097466,2	K562	blood:
4	chr14:104037950..104041311-chr14:104041482..104045327,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100711	Chromatin interaction
ENSG00000126214	Chromatin interaction
ENSG00000126215	Chromatin interaction
ENSG00000264904	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129401	1.00[AMR][1000 genomes]
rs10129621	1.00[AMR][1000 genomes]
rs10130887	1.00[AMR][1000 genomes]
rs10134819	1.00[AMR][1000 genomes]
rs10138787	1.00[AMR][1000 genomes]
rs10139205	1.00[AMR][1000 genomes]
rs10145934	1.00[AMR][1000 genomes]
rs10149860	1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs12100454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524598	1.00[AMR][1000 genomes]
rs28701683	1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	1.00[AMR][1000 genomes]
rs56324843	1.00[AMR][1000 genomes]
rs56666624	1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs58869129	1.00[AMR][1000 genomes]
rs58893021	1.00[AMR][1000 genomes]
rs60349773	1.00[AMR][1000 genomes]
rs61733762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141712	1.00[AMR][1000 genomes]
rs7148427	1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	1.00[AMR][1000 genomes]
rs7158326	1.00[AMR][1000 genomes]
rs7158972	1.00[AMR][1000 genomes]
rs73353046	1.00[AMR][1000 genomes]
rs73359246	1.00[AMR][1000 genomes]
rs73359248	1.00[AMR][1000 genomes]
rs73359263	1.00[AMR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	1.00[AMR][1000 genomes]
rs8009277	1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030000-104045000	Weak transcription	Aorta	Aorta
2	chr14:104030200-104044800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:104030600-104040800	Weak transcription	Right Ventricle	heart
4	chr14:104030600-104042400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:104030600-104042800	Weak transcription	Fetal Heart	heart
6	chr14:104030800-104042600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:104030800-104044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
9	chr14:104031400-104041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:104031600-104041000	Weak transcription	Left Ventricle	heart
11	chr14:104035400-104060400	Weak transcription	Fetal Brain Male	brain
12	chr14:104035800-104040800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:104035800-104040800	Weak transcription	Brain Substantia Nigra	brain
14	chr14:104036000-104041000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:104037400-104042600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:104037400-104048400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:104037800-104042000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:104037800-104042800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr14:104037800-104045400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:104038000-104042000	Strong transcription	Osteobl	bone
21	chr14:104038000-104042600	Strong transcription	Fetal Muscle Leg	muscle
22	chr14:104038000-104045600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr14:104038000-104045600	Strong transcription	Dnd41	blood
24	chr14:104038200-104041000	Weak transcription	NHDF-Ad	bronchial
25	chr14:104038200-104042800	Strong transcription	Fetal Intestine Small	intestine
26	chr14:104038400-104048800	Strong transcription	Fetal Brain Female	brain
27	chr14:104038400-104049400	Strong transcription	Primary T cells from cord blood	blood
28	chr14:104038600-104041800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:104038600-104042000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:104038600-104042000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:104038600-104042200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:104038600-104042200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:104038600-104042200	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr14:104038800-104041400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:104038800-104041400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:104038800-104042000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:104038800-104042600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:104038800-104042600	Strong transcription	Fetal Stomach	stomach
39	chr14:104038800-104042800	Strong transcription	Fetal Intestine Large	intestine
40	chr14:104038800-104045600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:104038800-104045600	Strong transcription	HepG2	liver
42	chr14:104038800-104045600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr14:104038800-104046000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:104038800-104051000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:104039000-104040800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr14:104039000-104041200	Weak transcription	A549	lung
47	chr14:104039000-104045800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:104039000-104046400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:104039200-104041600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:104039200-104042400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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