Variant report

Variant	rs58869129
Chromosome Location	chr14:103972314-103972315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:103955232..103957194-chr14:103970967..103972798,2	MCF-7	breast:
2	chr14:103967396..103969946-chr14:103970218..103972376,2	MCF-7	breast:
3	chr14:103965301..103968285-chr14:103970025..103972869,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075413	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10129401	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130887	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134819	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs12100454	1.00[AMR][1000 genomes]
rs28524598	1.00[AMR][1000 genomes]
rs28701683	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56324843	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56666624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs61733762	1.00[AMR][1000 genomes]
rs7141712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158972	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353046	1.00[AMR][1000 genomes]
rs73359246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359284	0.87[AFR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	1.00[AMR][1000 genomes]
rs73361323	1.00[AMR][1000 genomes]
rs73361328	1.00[AMR][1000 genomes]
rs73361331	1.00[AMR][1000 genomes]
rs73361334	1.00[AMR][1000 genomes]
rs73361335	1.00[AMR][1000 genomes]
rs73361345	1.00[AMR][1000 genomes]
rs73361349	1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8009277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
3	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	esv1835815	chr14:103942991-103989757	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
5	nsv1044967	chr14:103954727-104007051	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv1807091	chr14:103956182-104020454	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv1835824	chr14:103956182-104020454	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	esv1818859	chr14:103967299-103989757	Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
11	esv1833254	chr14:103967299-103989757	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
12	esv1835374	chr14:103967299-103989757	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
13	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
15	esv1834605	chr14:103969909-104003091	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103923200-103976800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:103927800-103979800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:103947600-103972800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr14:103947600-103980000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:103950400-103978800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:103950600-103979000	Strong transcription	Fetal Intestine Small	intestine
7	chr14:103951600-103972600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:103951600-103972800	Strong transcription	Dnd41	blood
9	chr14:103951600-103976600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:103953000-103972800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:103953800-103977200	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr14:103953800-103978800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr14:103958200-103978200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:103958800-103980400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr14:103960000-103978000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:103962600-103978400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:103962600-103979000	Weak transcription	Right Atrium	heart
18	chr14:103963600-103978000	Strong transcription	Placenta	Placenta
19	chr14:103965200-103978600	Strong transcription	Thymus	Thymus
20	chr14:103965400-103973400	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:103965400-103977600	Strong transcription	Primary T cells from cord blood	blood
22	chr14:103965400-103978600	Strong transcription	Fetal Intestine Large	intestine
23	chr14:103965800-103978200	Strong transcription	Left Ventricle	heart
24	chr14:103966000-103973200	Strong transcription	Spleen	Spleen
25	chr14:103966400-103978000	Strong transcription	NHEK	skin
26	chr14:103966800-103972800	Strong transcription	Fetal Thymus	thymus
27	chr14:103966800-103972800	Strong transcription	Hela-S3	cervix
28	chr14:103966800-103977000	Strong transcription	NH-A	brain
29	chr14:103967000-103972400	Strong transcription	Liver	Liver
30	chr14:103967000-103972400	Strong transcription	Esophagus	oesophagus
31	chr14:103967000-103972600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr14:103967000-103972600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:103967000-103972600	Strong transcription	K562	blood
34	chr14:103967000-103972800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:103967000-103973000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:103967000-103973000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr14:103967000-103974600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:103967000-103977200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:103967000-103977200	Strong transcription	HMEC	breast
40	chr14:103967000-103977200	Strong transcription	NHLF	lung
41	chr14:103967000-103978000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr14:103967000-103978800	Strong transcription	Fetal Muscle Leg	muscle
43	chr14:103967000-103979000	Strong transcription	Fetal Stomach	stomach
44	chr14:103967000-103980000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:103967000-103980600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:103967000-103981400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:103967200-103972600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr14:103967200-103972800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:103967200-103972800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr14:103967200-103972800	Strong transcription	Fetal Lung	lung

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