Variant report

Variant	rs73361335
Chromosome Location	chr14:104031461-104031462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104026845..104031617-chr14:104090112..104098528,12	MCF-7	breast:
2	chr14:103986804..103989544-chr14:104030581..104032325,2	K562	blood:
3	chr14:104026574..104032100-chr14:104033737..104038565,9	MCF-7	breast:
4	chr14:104027886..104033252-chr14:104178637..104183670,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126215	Chromatin interaction
ENSG00000256053	Chromatin interaction
ENSG00000100711	Chromatin interaction
ENSG00000126214	Chromatin interaction
ENSG00000269963	Chromatin interaction
ENSG00000166165	Chromatin interaction
ENSG00000201184	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10129401	1.00[AMR][1000 genomes]
rs10129621	1.00[AMR][1000 genomes]
rs10130887	1.00[AMR][1000 genomes]
rs10134819	1.00[AMR][1000 genomes]
rs10138787	1.00[AMR][1000 genomes]
rs10139205	1.00[AMR][1000 genomes]
rs10145934	1.00[AMR][1000 genomes]
rs10149860	1.00[AMR][1000 genomes]
rs10220595	1.00[AMR][1000 genomes]
rs12100454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524598	1.00[AMR][1000 genomes]
rs28701683	1.00[AMR][1000 genomes]
rs28701880	1.00[AMR][1000 genomes]
rs28711428	1.00[AMR][1000 genomes]
rs56324843	1.00[AMR][1000 genomes]
rs56666624	1.00[AMR][1000 genomes]
rs57987958	1.00[AMR][1000 genomes]
rs58869129	1.00[AMR][1000 genomes]
rs60349773	1.00[AMR][1000 genomes]
rs61733762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141712	1.00[AMR][1000 genomes]
rs7148427	1.00[AMR][1000 genomes]
rs7150651	1.00[AMR][1000 genomes]
rs7155401	1.00[AMR][1000 genomes]
rs7158326	1.00[AMR][1000 genomes]
rs7158972	1.00[AMR][1000 genomes]
rs73353046	1.00[AMR][1000 genomes]
rs73359246	1.00[AMR][1000 genomes]
rs73359248	1.00[AMR][1000 genomes]
rs73359263	1.00[AMR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365132	1.00[AMR][1000 genomes]
rs8006030	1.00[AMR][1000 genomes]
rs8009277	1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902303	chr14:103979953-104034746	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	esv1839595	chr14:103987140-104034746	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030000-104032800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:104030000-104045000	Weak transcription	Aorta	Aorta
3	chr14:104030200-104031600	Enhancers	Pancreas	Pancrea
4	chr14:104030200-104031800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr14:104030200-104032800	Weak transcription	Gastric	stomach
6	chr14:104030200-104040600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:104030200-104044800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:104030400-104031600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:104030400-104031600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:104030400-104031600	Enhancers	Ovary	ovary
11	chr14:104030400-104032200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:104030400-104034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:104030400-104040600	Weak transcription	Lung	lung
14	chr14:104030600-104032000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:104030600-104032800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:104030600-104035200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:104030600-104035200	Weak transcription	Placenta	Placenta
18	chr14:104030600-104035400	Weak transcription	Fetal Kidney	kidney
19	chr14:104030600-104037200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:104030600-104039200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:104030600-104039600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr14:104030600-104040600	Weak transcription	HSMMtube	muscle
23	chr14:104030600-104040800	Weak transcription	Right Ventricle	heart
24	chr14:104030600-104042400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:104030600-104042800	Weak transcription	Fetal Heart	heart
26	chr14:104030800-104031600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:104030800-104031600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:104030800-104031600	Enhancers	Brain Germinal Matrix	brain
29	chr14:104030800-104031600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:104030800-104031600	Enhancers	Stomach Smooth Muscle	stomach
31	chr14:104030800-104031800	Enhancers	Liver	Liver
32	chr14:104030800-104032200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:104030800-104032400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:104030800-104032800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:104030800-104032800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:104030800-104032800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:104030800-104032800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:104030800-104032800	Weak transcription	Fetal Brain Female	brain
39	chr14:104030800-104032800	Weak transcription	Fetal Intestine Small	intestine
40	chr14:104030800-104032800	Weak transcription	Fetal Muscle Leg	muscle
41	chr14:104030800-104032800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:104030800-104032800	Weak transcription	Stomach Mucosa	stomach
43	chr14:104030800-104032800	Enhancers	Dnd41	blood
44	chr14:104030800-104033000	Weak transcription	Primary T cells from cord blood	blood
45	chr14:104030800-104033000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr14:104030800-104033400	Enhancers	GM12878-XiMat	blood
47	chr14:104030800-104033800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:104030800-104034000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr14:104030800-104034000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:104030800-104034000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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