Variant report

Variant	rs73365132
Chromosome Location	chr14:103883279-103883280
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:103876768..103879568-chr14:103882112..103883749,2	MCF-7	breast:
2	chr14:103799657..103801289-chr14:103882797..103884617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244691	Chromatin interaction
ENSG00000100664	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10129401	1.00[AMR][1000 genomes]
rs10129621	1.00[AMR][1000 genomes]
rs10130887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138787	1.00[AMR][1000 genomes]
rs10139205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145934	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149860	1.00[AMR][1000 genomes]
rs10220595	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100454	1.00[AMR][1000 genomes]
rs28524598	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701683	1.00[AMR][1000 genomes]
rs28701880	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711428	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56324843	1.00[AMR][1000 genomes]
rs56666624	1.00[AMR][1000 genomes]
rs57987958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58869129	1.00[AMR][1000 genomes]
rs61733762	1.00[AMR][1000 genomes]
rs7141712	1.00[AMR][1000 genomes]
rs7148427	1.00[AMR][1000 genomes]
rs7150651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155401	1.00[AMR][1000 genomes]
rs7158326	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158972	1.00[AMR][1000 genomes]
rs73353046	1.00[AMR][1000 genomes]
rs73359246	1.00[AMR][1000 genomes]
rs73359248	1.00[AMR][1000 genomes]
rs73359263	1.00[AMR][1000 genomes]
rs73359299	1.00[AMR][1000 genomes]
rs73359301	1.00[AMR][1000 genomes]
rs73361317	1.00[AMR][1000 genomes]
rs73361323	1.00[AMR][1000 genomes]
rs73361328	1.00[AMR][1000 genomes]
rs73361331	1.00[AMR][1000 genomes]
rs73361334	1.00[AMR][1000 genomes]
rs73361335	1.00[AMR][1000 genomes]
rs73361345	1.00[AMR][1000 genomes]
rs73361349	1.00[AMR][1000 genomes]
rs8006030	1.00[AMR][1000 genomes]
rs8009277	1.00[AMR][1000 genomes]
rs8015505	1.00[AMR][1000 genomes]
rs879551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103862000-103919400	Weak transcription	Colonic Mucosa	Colon
2	chr14:103866600-103883400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:103868400-103883800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:103871000-103883600	Strong transcription	Dnd41	blood
5	chr14:103871000-103884400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:103871600-103883400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:103872200-103883800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr14:103874600-103884200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:103874600-103900800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:103875200-103888200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:103875200-103889200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:103875200-103893600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:103875400-103883600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:103875400-103884200	Weak transcription	Psoas Muscle	Psoas
15	chr14:103875400-103884600	Weak transcription	Small Intestine	intestine
16	chr14:103875400-103887400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:103875400-103888600	Weak transcription	Gastric	stomach
18	chr14:103875400-103889600	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:103875400-103892200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:103875400-103893600	Weak transcription	Brain Germinal Matrix	brain
21	chr14:103875600-103883400	Weak transcription	Stomach Mucosa	stomach
22	chr14:103875600-103884600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr14:103875600-103893800	Weak transcription	Fetal Heart	heart
24	chr14:103875600-103894000	Weak transcription	Fetal Brain Male	brain
25	chr14:103875800-103889800	Weak transcription	Lung	lung
26	chr14:103876600-103883400	Strong transcription	Fetal Thymus	thymus
27	chr14:103876800-103887800	Weak transcription	Pancreas	Pancrea
28	chr14:103877400-103883400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:103877800-103883400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr14:103879000-103883800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:103879000-103892800	Weak transcription	Spleen	Spleen
32	chr14:103879000-103895200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:103879000-103914200	Weak transcription	Esophagus	oesophagus
34	chr14:103879000-103941400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:103879200-103883400	Weak transcription	GM12878-XiMat	blood
36	chr14:103879200-103887200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:103879600-103889400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:103879800-103887400	Weak transcription	HepG2	liver
39	chr14:103880000-103883400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:103880200-103884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:103880400-103894200	Weak transcription	Liver	Liver
42	chr14:103880400-103904600	Weak transcription	Fetal Kidney	kidney
43	chr14:103881000-103883400	Weak transcription	Hela-S3	cervix
44	chr14:103881000-103883800	Weak transcription	Primary T cells from cord blood	blood
45	chr14:103881000-103887000	Weak transcription	Thymus	Thymus
46	chr14:103881000-103889200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:103881000-103890600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:103881000-103900600	Weak transcription	Placenta	Placenta
49	chr14:103881200-103883400	Weak transcription	A549	lung
50	chr14:103881200-103883800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links