Variant report

Variant	rs10143439
Chromosome Location	chr14:25581177-25581178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133686	0.82[EUR][1000 genomes]
rs10138503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11847778	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17109547	0.84[EUR][1000 genomes]
rs1952500	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1952507	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1958381	0.82[EUR][1000 genomes]
rs1958383	0.82[EUR][1000 genomes]
rs2332465	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979911	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574172	0.87[EUR][1000 genomes]
rs7147345	0.83[EUR][1000 genomes]
rs8008544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs913684	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25577600-25581200	Enhancers	Fetal Heart	heart
2	chr14:25577800-25581200	Enhancers	NHLF	lung
3	chr14:25577800-25582600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:25578000-25581200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:25578400-25583400	Weak transcription	Psoas Muscle	Psoas
6	chr14:25578600-25582000	Weak transcription	Stomach Mucosa	stomach
7	chr14:25578600-25583600	Weak transcription	Gastric	stomach
8	chr14:25579200-25581200	Enhancers	Fetal Muscle Leg	muscle
9	chr14:25579400-25582600	Weak transcription	Fetal Intestine Small	intestine
10	chr14:25580000-25581200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:25580200-25581200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:25580400-25581200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:25580400-25581200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:25580400-25581400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:25580400-25581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:25580600-25581200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:25580600-25581200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:25580600-25581200	Active TSS	Right Ventricle	heart
19	chr14:25580600-25581200	Enhancers	NHDF-Ad	bronchial
20	chr14:25580600-25583000	Active TSS	Right Atrium	heart
21	chr14:25580800-25581200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:25580800-25581200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr14:25580800-25581200	Active TSS	Left Ventricle	heart
24	chr14:25580800-25581400	Weak transcription	Pancreas	Pancrea
25	chr14:25580800-25581400	Enhancers	NH-A	brain
26	chr14:25580800-25586200	Weak transcription	Fetal Intestine Large	intestine
27	chr14:25581000-25581200	Enhancers	HSMMtube	muscle
28	chr14:25581000-25581200	Flanking Active TSS	Osteobl	bone
29	chr14:25581000-25581800	Enhancers	HSMM	muscle
30	chr14:25581000-25589600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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