Variant report
| Variant | rs17109547 |
|---|---|
| Chromosome Location | chr14:25531663-25531664 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10133686 | 0.93[EUR][1000 genomes] |
| rs10138503 | 0.84[EUR][1000 genomes] |
| rs10143439 | 0.84[EUR][1000 genomes] |
| rs11847778 | 0.83[EUR][1000 genomes] |
| rs17109515 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17109537 | 0.88[EUR][1000 genomes] |
| rs1952491 | 0.83[EUR][1000 genomes] |
| rs1952499 | 0.82[EUR][1000 genomes] |
| rs1952500 | 0.83[EUR][1000 genomes] |
| rs1952507 | 0.83[EUR][1000 genomes] |
| rs1958381 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1958383 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2003997 | 0.88[EUR][1000 genomes] |
| rs2094659 | 0.83[EUR][1000 genomes] |
| rs2225269 | 0.91[EUR][1000 genomes] |
| rs2332465 | 0.83[EUR][1000 genomes] |
| rs4522329 | 0.88[EUR][1000 genomes] |
| rs58205855 | 0.82[ASN][1000 genomes] |
| rs58590969 | 0.83[EUR][1000 genomes] |
| rs61979908 | 0.83[EUR][1000 genomes] |
| rs61979911 | 0.83[EUR][1000 genomes] |
| rs61979914 | 0.84[EUR][1000 genomes] |
| rs6574172 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7147345 | 0.94[EUR][1000 genomes] |
| rs7152812 | 0.83[EUR][1000 genomes] |
| rs8008544 | 0.83[EUR][1000 genomes] |
| rs873103 | 0.91[EUR][1000 genomes] |
| rs913684 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901504 | chr14:25184210-25646203 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv901509 | chr14:25398571-25743484 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv901511 | chr14:25505085-25588029 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:25521600-25534400 | Weak transcription | Pancreas | Pancrea |
