Variant report

Variant	rs2332465
Chromosome Location	chr14:25565333-25565334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10133686	0.81[EUR][1000 genomes]
rs10138503	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143439	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11847778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11850786	0.82[CEU][hapmap]
rs17109382	0.82[CEU][hapmap]
rs17109401	0.82[CEU][hapmap]
rs17109406	0.81[CEU][hapmap]
rs17109462	0.81[CEU][hapmap]
rs17109515	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs17109537	1.00[CEU][hapmap]
rs17109547	0.83[EUR][1000 genomes]
rs1952500	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1952507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958381	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1958383	0.81[EUR][1000 genomes]
rs2094659	0.91[CEU][hapmap]
rs61979908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574172	0.85[EUR][1000 genomes]
rs7147345	0.82[EUR][1000 genomes]
rs7152812	0.89[CEU][hapmap]
rs7153837	0.91[CEU][hapmap]
rs7155485	0.82[CEU][hapmap]
rs8008544	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8008618	0.91[CEU][hapmap]
rs8009099	0.91[CEU][hapmap]
rs913684	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25562600-25565600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:25563600-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:25563800-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:25564200-25565800	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:25564600-25565800	Enhancers	Fetal Intestine Large	intestine
6	chr14:25564600-25565800	Enhancers	Fetal Intestine Small	intestine
7	chr14:25564600-25566000	Enhancers	Fetal Lung	lung
8	chr14:25564800-25565400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:25565000-25565400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:25565000-25565400	Enhancers	Fetal Heart	heart
11	chr14:25565000-25565400	Enhancers	Fetal Kidney	kidney
12	chr14:25565000-25565400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:25565000-25565400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr14:25565000-25565400	Enhancers	Right Atrium	heart
15	chr14:25565000-25565600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:25565000-25565600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr14:25565000-25565600	Enhancers	Placenta	Placenta
18	chr14:25565000-25565600	Enhancers	Left Ventricle	heart
19	chr14:25565000-25565600	Enhancers	Stomach Mucosa	stomach
20	chr14:25565000-25565800	Enhancers	Colonic Mucosa	Colon
21	chr14:25565000-25565800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr14:25565200-25565400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:25565200-25565400	Enhancers	Right Ventricle	heart
24	chr14:25565200-25565600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:25565200-25565600	Enhancers	Esophagus	oesophagus
26	chr14:25565200-25565600	Enhancers	Fetal Muscle Leg	muscle
27	chr14:25565200-25565600	Enhancers	Gastric	stomach

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