Variant report

Variant	rs1952500
Chromosome Location	chr14:25555356-25555357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10133686	0.81[EUR][1000 genomes]
rs10138503	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10143439	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11847778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850786	0.81[CEU][hapmap]
rs17109382	0.81[CEU][hapmap]
rs17109406	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs17109462	0.81[CEU][hapmap];0.89[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs17109515	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17109537	1.00[CEU][hapmap]
rs17109547	0.83[EUR][1000 genomes]
rs1952507	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1958381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1958383	0.81[EUR][1000 genomes]
rs2094659	0.91[CEU][hapmap]
rs2332465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979908	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979911	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979914	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6574172	0.85[EUR][1000 genomes]
rs7147345	0.82[EUR][1000 genomes]
rs7152812	0.88[CEU][hapmap]
rs7153837	0.91[CEU][hapmap];0.90[GIH][hapmap];0.96[TSI][hapmap]
rs7155485	0.81[CEU][hapmap]
rs8008544	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8008618	0.91[CEU][hapmap]
rs8009099	0.91[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.96[TSI][hapmap]
rs913684	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1952500	DHRS1	cis	parietal	SCAN
rs1952500	NRL	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25547000-25561600	Weak transcription	Pancreas	Pancrea
2	chr14:25551800-25555600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:25554000-25555600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:25554800-25555400	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr14:25555200-25555400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr14:25555200-25558200	Enhancers	Primary monocytes fromperipheralblood	blood

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