Variant report
Variant | rs1952507 |
---|---|
Chromosome Location | chr14:25571312-25571313 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-STXBP6-1 | chr14:25571098-25571467 | XLOC_010978 |
2 | lnc-RP11-80A15.1.1-3 | chr14:25571262-25571468 | XLOC_010773 |
3 | lnc-STXBP6-1 | chr14:25571045-25571467 | XLOC_010978 |
4 | lnc-STXBP6-1 | chr14:25571251-25571467 | NONHSAT036073 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10133686 | 0.81[EUR][1000 genomes] |
rs10138503 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10143439 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11847778 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11850786 | 0.82[CEU][hapmap] |
rs17109382 | 0.82[CEU][hapmap] |
rs17109406 | 0.81[CEU][hapmap] |
rs17109462 | 0.81[CEU][hapmap] |
rs17109515 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17109537 | 1.00[CEU][hapmap] |
rs17109547 | 0.83[EUR][1000 genomes] |
rs1952500 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1958381 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs1958383 | 0.81[EUR][1000 genomes] |
rs2094659 | 0.91[CEU][hapmap] |
rs2332465 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61979908 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61979911 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61979914 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6574172 | 0.85[EUR][1000 genomes] |
rs7147345 | 0.82[EUR][1000 genomes] |
rs7152812 | 0.89[CEU][hapmap] |
rs7153837 | 0.91[CEU][hapmap] |
rs7155485 | 0.82[CEU][hapmap] |
rs8008544 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs8008618 | 0.91[CEU][hapmap] |
rs8009099 | 0.91[CEU][hapmap] |
rs913684 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv901504 | chr14:25184210-25646203 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv901509 | chr14:25398571-25743484 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv901511 | chr14:25505085-25588029 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv3490801 | chr14:25560793-25675699 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | esv3490802 | chr14:25560793-25675699 | Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:25566600-25573400 | Weak transcription | Placenta Amnion | Placenta Amnion |