Variant report

Variant	rs10143944
Chromosome Location	chr14:66145374-66145375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66136933..66139072-chr14:66142582..66145379,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10083327	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083356	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129221	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129828	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131095	1.00[AMR][1000 genomes]
rs10131616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135224	1.00[AFR][1000 genomes]
rs10136600	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10138881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139190	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10141632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142520	1.00[AMR][1000 genomes]
rs10143378	1.00[AMR][1000 genomes]
rs10144478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146510	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147262	1.00[AMR][1000 genomes]
rs10148449	1.00[AMR][1000 genomes]
rs10150722	1.00[AMR][1000 genomes]
rs10162357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102765	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102767	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102769	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399233	1.00[AMR][1000 genomes]
rs28415772	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452937	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482071	1.00[AMR][1000 genomes]
rs28489429	1.00[AMR][1000 genomes]
rs28571055	1.00[AMR][1000 genomes]
rs28583895	1.00[AMR][1000 genomes]
rs28612256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789146	1.00[AMR][1000 genomes]
rs28789509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808288	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808905	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28864090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28890806	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57330939	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286155	0.90[AFR][1000 genomes]
rs73286159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:66105000-66149600	Weak transcription	Fetal Thymus	thymus
3	chr14:66105000-66157400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:66125600-66146600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:66125600-66157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:66126400-66146800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:66126800-66153400	Weak transcription	Aorta	Aorta
8	chr14:66130400-66146600	Weak transcription	Brain Angular Gyrus	brain
9	chr14:66134200-66153200	Weak transcription	Ovary	ovary
10	chr14:66136200-66155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:66136400-66148600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:66137600-66146600	Weak transcription	Fetal Intestine Small	intestine
14	chr14:66138000-66177400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:66139200-66146800	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:66139200-66153800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:66139200-66155400	Weak transcription	Primary T cells from cord blood	blood
18	chr14:66140200-66150000	Weak transcription	GM12878-XiMat	blood
19	chr14:66140600-66147000	Weak transcription	Primary B cells from cord blood	blood
20	chr14:66141600-66156600	Weak transcription	Fetal Intestine Large	intestine
21	chr14:66142000-66148600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:66143600-66146800	Weak transcription	Stomach Mucosa	stomach
23	chr14:66143600-66147000	Weak transcription	Brain Substantia Nigra	brain
24	chr14:66143800-66155600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:66144800-66155200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links