Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10129416	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137751	1.00[EUR][1000 genomes]
rs10141461	1.00[CEU][hapmap]
rs10149875	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1029146	1.00[EUR][1000 genomes]
rs1387756	1.00[CEU][hapmap]
rs2101552	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2101553	1.00[CEU][hapmap]
rs2130445	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2171877	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2171878	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28491761	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754390	1.00[EUR][1000 genomes]
rs4902178	1.00[EUR][1000 genomes]
rs4902182	1.00[CEU][hapmap]
rs6573457	1.00[EUR][1000 genomes]
rs6573459	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7141353	1.00[EUR][1000 genomes]
rs7154700	1.00[EUR][1000 genomes]
rs7156368	1.00[CEU][hapmap]
rs7157416	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7157560	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7158523	1.00[EUR][1000 genomes]
rs8003224	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs8009892	1.00[CEU][hapmap]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63202800-63212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63207200-63208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:63207400-63216400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:63208000-63208400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:63208000-63208600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:63208200-63209400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:63208200-63210400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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