Variant report

Variant	rs7154700
Chromosome Location	chr14:63201771-63201772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10129416	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10131119	0.99[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10137751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10141461	0.89[YRI][hapmap]
rs10144027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10146411	1.00[TSI][hapmap]
rs10146714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10147738	1.00[EUR][1000 genomes]
rs10149875	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1029146	1.00[EUR][1000 genomes]
rs10483755	0.82[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1387756	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17100353	0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17100383	0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs17100391	0.82[CHB][hapmap]
rs2101552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs2130445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171877	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2171878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491761	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754390	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4899094	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4902178	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4902182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61472478	0.98[ASN][1000 genomes]
rs6573457	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6573459	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7141353	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7141855	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7141868	0.82[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7149270	0.85[JPT][hapmap]
rs7150550	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs7156368	1.00[CEU][hapmap]
rs7157416	0.91[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157560	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7158523	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73271163	0.89[ASN][1000 genomes]
rs73271176	0.89[ASN][1000 genomes]
rs73271181	0.87[ASN][1000 genomes]
rs73271182	0.91[ASN][1000 genomes]
rs73271187	0.85[ASN][1000 genomes]
rs73271188	0.89[ASN][1000 genomes]
rs73271190	0.87[ASN][1000 genomes]
rs73271194	0.85[ASN][1000 genomes]
rs74058950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8003224	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8003765	0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs8007544	0.85[JPT][hapmap]
rs8009892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8010787	0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs8010814	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv976814	chr14:63192257-63202004	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63200800-63202200	Enhancers	NHEK	skin
2	chr14:63200800-63203000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:63201000-63202200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:63201000-63202800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:63201000-63203400	Enhancers	HMEC	breast

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