Variant report

Variant	rs4899094
Chromosome Location	chr14:63188815-63188816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63143123..63145885-chr14:63188490..63191423,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10129416	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10131119	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10137751	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10144027	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146411	1.00[TSI][hapmap]
rs10146714	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483755	0.84[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1387756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17100280	0.86[CHB][hapmap]
rs17100353	0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17100383	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2101552	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2101553	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2130445	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2171877	1.00[CEU][hapmap]
rs2171878	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28754390	0.81[AFR][1000 genomes]
rs4902178	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4902182	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61472478	0.98[ASN][1000 genomes]
rs6573457	1.00[CEU][hapmap]
rs6573459	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7141353	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7141855	0.89[ASN][1000 genomes]
rs7141868	0.89[ASN][1000 genomes]
rs7149270	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7150550	0.85[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs7154700	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7156368	1.00[CEU][hapmap]
rs7157416	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs7157560	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7158523	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73271163	0.85[ASN][1000 genomes]
rs73271176	0.85[ASN][1000 genomes]
rs73271181	0.83[ASN][1000 genomes]
rs73271182	0.87[ASN][1000 genomes]
rs73271187	0.85[ASN][1000 genomes]
rs73271188	0.85[ASN][1000 genomes]
rs73271190	0.83[ASN][1000 genomes]
rs73271194	0.85[ASN][1000 genomes]
rs74058950	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003224	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8003765	0.84[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap]
rs8007544	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs8008313	0.84[CHB][hapmap]
rs8009892	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs8010787	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs8010814	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63178600-63193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63188800-63189200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:63188800-63189400	Enhancers	NHEK	skin
4	chr14:63188800-63189800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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