Variant report

Variant	rs6573459
Chromosome Location	chr14:63188007-63188008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10129416	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10131119	0.81[AFR][1000 genomes]
rs10137751	1.00[EUR][1000 genomes]
rs10141461	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10144027	0.82[AFR][1000 genomes]
rs10146714	0.82[AFR][1000 genomes]
rs10147738	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10149875	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1029146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1387756	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2101552	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2101553	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2130445	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2171877	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171878	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28491761	1.00[EUR][1000 genomes]
rs28754390	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4141694	0.83[AMR][1000 genomes]
rs4899094	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4902178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902182	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6573457	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7141353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7154700	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7156368	1.00[CEU][hapmap]
rs7157416	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7157560	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7158523	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058950	0.82[AFR][1000 genomes]
rs8003224	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009892	1.00[CEU][hapmap]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6573459	WWC3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63178600-63193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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