Variant report

Variant	rs28754390
Chromosome Location	chr14:63201275-63201276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129416	1.00[EUR][1000 genomes]
rs10131119	0.92[AFR][1000 genomes]
rs10137751	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10144027	0.93[AFR][1000 genomes]
rs10146714	0.93[AFR][1000 genomes]
rs10147738	1.00[EUR][1000 genomes]
rs10149875	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1029146	1.00[EUR][1000 genomes]
rs1387756	0.81[AFR][1000 genomes]
rs2101552	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2130445	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2171877	1.00[EUR][1000 genomes]
rs2171878	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28491761	1.00[EUR][1000 genomes]
rs4899094	0.81[AFR][1000 genomes]
rs4902178	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4902182	0.81[AFR][1000 genomes]
rs6573457	1.00[EUR][1000 genomes]
rs6573459	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7141353	1.00[EUR][1000 genomes]
rs7154700	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7157416	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7157560	1.00[EUR][1000 genomes]
rs7158523	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74058950	0.91[AFR][1000 genomes]
rs8003224	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs915062	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv976814	chr14:63192257-63202004	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63200800-63202200	Enhancers	NHEK	skin
2	chr14:63200800-63203000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:63201000-63202200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:63201000-63202800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:63201000-63203400	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links