Variant report
| Variant | rs915062 |
|---|---|
| Chromosome Location | chr14:63177682-63177683 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10129416 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10137751 | 1.00[EUR][1000 genomes] |
| rs10141461 | 1.00[CEU][hapmap] |
| rs10147738 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10149875 | 1.00[EUR][1000 genomes] |
| rs1029146 | 1.00[EUR][1000 genomes] |
| rs1387756 | 1.00[CEU][hapmap] |
| rs2101552 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2101553 | 1.00[CEU][hapmap] |
| rs2130445 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2171877 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs2171878 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs28491761 | 1.00[EUR][1000 genomes] |
| rs28754390 | 1.00[EUR][1000 genomes] |
| rs4899094 | 1.00[CEU][hapmap] |
| rs4902178 | 1.00[EUR][1000 genomes] |
| rs4902182 | 1.00[CEU][hapmap] |
| rs6573456 | 0.82[AMR][1000 genomes] |
| rs6573457 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6573459 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7141353 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7154700 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7156368 | 1.00[CEU][hapmap] |
| rs7157416 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7157560 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7158523 | 1.00[EUR][1000 genomes] |
| rs8003224 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs8009892 | 1.00[CEU][hapmap] |
| rs8012960 | 1.00[CEU][hapmap] |
| rs8020283 | 1.00[CEU][hapmap] |
| rs915064 | 0.99[AFR][1000 genomes] |
| rs915065 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs933040 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902014 | chr14:63137629-63178635 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv527675 | chr14:63168547-63211280 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:63168200-63182400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr14:63168400-63177800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
