Variant report

Variant	rs8009892
Chromosome Location	chr14:63198884-63198885
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10129416	1.00[CEU][hapmap]
rs10131119	0.98[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10137751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10141461	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs10144027	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10146714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10147738	1.00[CEU][hapmap]
rs10149875	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10483755	0.82[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1387756	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17100353	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17100383	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs17100391	0.85[CHB][hapmap]
rs2101552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2101553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2130445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2171877	1.00[CEU][hapmap]
rs2171878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28491761	0.81[AMR][1000 genomes]
rs28754390	0.92[AFR][1000 genomes]
rs4899094	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4902178	0.86[AFR][1000 genomes]
rs4902182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61472478	0.98[ASN][1000 genomes]
rs6573457	1.00[CEU][hapmap]
rs6573459	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs7141353	1.00[CEU][hapmap]
rs7141855	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7141868	0.85[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7149270	0.85[JPT][hapmap]
rs7150550	0.85[JPT][hapmap]
rs7154700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7156368	1.00[CEU][hapmap]
rs7157416	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7157560	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7158523	0.86[AFR][1000 genomes]
rs73271163	0.89[ASN][1000 genomes]
rs73271176	0.89[ASN][1000 genomes]
rs73271181	0.87[ASN][1000 genomes]
rs73271182	0.91[ASN][1000 genomes]
rs73271187	0.85[ASN][1000 genomes]
rs73271188	0.89[ASN][1000 genomes]
rs73271190	0.87[ASN][1000 genomes]
rs73271194	0.85[ASN][1000 genomes]
rs74058950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8003224	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs8003765	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs8007544	0.85[JPT][hapmap]
rs8010787	0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs8010814	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv976814	chr14:63192257-63202004	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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