Variant report

Variant	rs7141353
Chromosome Location	chr14:63178635-63178636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63172390..63174110-chr14:63177789..63180430,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10129416	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10137751	1.00[EUR][1000 genomes]
rs10146411	1.00[TSI][hapmap]
rs10147738	1.00[EUR][1000 genomes]
rs10149875	1.00[EUR][1000 genomes]
rs1029146	1.00[EUR][1000 genomes]
rs1032306	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11158447	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1387756	1.00[CEU][hapmap]
rs17100353	1.00[GIH][hapmap]
rs2101552	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2101553	1.00[CEU][hapmap]
rs2130445	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2171877	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2171878	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28491761	1.00[EUR][1000 genomes]
rs28754390	1.00[EUR][1000 genomes]
rs4899094	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4902178	1.00[EUR][1000 genomes]
rs4902182	1.00[CEU][hapmap]
rs6573457	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573459	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7154700	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7156368	1.00[CEU][hapmap]
rs7157416	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7157560	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7158523	1.00[EUR][1000 genomes]
rs8003224	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8003765	1.00[GIH][hapmap]
rs8009892	1.00[CEU][hapmap]
rs8010814	1.00[GIH][hapmap]
rs8012960	1.00[CEU][hapmap]
rs8020283	1.00[CEU][hapmap]
rs915062	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs915064	0.85[MKK][hapmap]
rs915065	0.83[AMR][1000 genomes]
rs933040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902014	chr14:63137629-63178635	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63168200-63182400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:63177800-63178800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:63178400-63178800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr14:63178400-63179400	Active TSS	Spleen	Spleen
5	chr14:63178600-63178800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:63178600-63193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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