Variant report

Variant	rs10151983
Chromosome Location	chr14:32830722-32830723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10129967	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10131297	0.90[ASN][1000 genomes]
rs10132146	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134645	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10135655	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136107	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136452	0.83[EUR][1000 genomes]
rs10137128	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139496	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10140526	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10143009	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10143442	0.83[EUR][1000 genomes]
rs10148659	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10150678	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10151749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151990	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220343	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10431652	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10483397	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12050081	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12717220	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12889258	0.83[EUR][1000 genomes]
rs12896756	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17098849	0.83[EUR][1000 genomes]
rs17098889	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1951688	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1951690	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1998429	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28451992	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28563822	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28599717	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784167	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3784173	0.81[EUR][1000 genomes]
rs66517744	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7141313	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7146562	0.83[EUR][1000 genomes]
rs7147285	0.83[EUR][1000 genomes]
rs7148036	0.83[EUR][1000 genomes]
rs7148165	0.95[EUR][1000 genomes]
rs7149335	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7151681	0.82[EUR][1000 genomes]
rs7153398	0.83[EUR][1000 genomes]
rs7160178	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8017400	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8020364	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322897	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9322898	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386382	chr14:32830429-32831802	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
4	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:32828200-32831000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:32828200-32831800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:32828200-32833400	Weak transcription	Brain Germinal Matrix	brain
8	chr14:32829000-32831400	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:32830400-32830800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:32830400-32831000	Enhancers	Brain Substantia Nigra	brain
11	chr14:32830400-32831400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:32830400-32831600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:32830400-32835000	Enhancers	Brain Anterior Caudate	brain
14	chr14:32830600-32831000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:32830600-32831600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:32830600-32833400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:32830600-32840400	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain

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