Variant report

Variant	rs28563822
Chromosome Location	chr14:32825030-32825031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32817648..32820020-chr14:32823039..32825542,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10129967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132146	0.81[AMR][1000 genomes]
rs10135545	0.94[ASN][1000 genomes]
rs10135655	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10136107	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10136452	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10137128	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10139496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10139567	0.85[ASN][1000 genomes]
rs10140077	0.90[ASN][1000 genomes]
rs10140526	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10143009	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143442	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145127	0.84[ASN][1000 genomes]
rs10145282	0.84[ASN][1000 genomes]
rs10148659	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10150574	0.85[ASN][1000 genomes]
rs10150657	0.85[ASN][1000 genomes]
rs10150670	0.91[ASN][1000 genomes]
rs10150678	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10151233	0.84[ASN][1000 genomes]
rs10151749	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10151983	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10151990	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10220343	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10431651	0.93[ASN][1000 genomes]
rs10431652	0.82[AMR][1000 genomes]
rs10483397	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11849373	0.85[ASN][1000 genomes]
rs11849501	0.84[ASN][1000 genomes]
rs11849651	0.84[ASN][1000 genomes]
rs12050081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12717220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879177	0.86[ASN][1000 genomes]
rs12883558	0.99[ASN][1000 genomes]
rs12885011	0.94[ASN][1000 genomes]
rs12889258	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12896756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12897283	0.92[ASN][1000 genomes]
rs17098769	0.84[ASN][1000 genomes]
rs17098849	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17098889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951688	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1951690	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1998429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2383313	0.88[EUR][1000 genomes]
rs28451992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34247479	0.85[ASN][1000 genomes]
rs35403923	0.92[ASN][1000 genomes]
rs3784167	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58625904	0.88[ASN][1000 genomes]
rs66517744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67938997	0.96[ASN][1000 genomes]
rs71427210	0.85[ASN][1000 genomes]
rs7146034	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146346	0.92[ASN][1000 genomes]
rs7146562	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7147028	0.92[ASN][1000 genomes]
rs7147285	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148036	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148165	0.81[EUR][1000 genomes]
rs7148808	0.86[ASN][1000 genomes]
rs7149335	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7151681	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7153398	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7160178	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8006624	0.89[ASN][1000 genomes]
rs8017400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019207	0.94[ASN][1000 genomes]
rs8020196	0.92[ASN][1000 genomes]
rs8020197	0.92[ASN][1000 genomes]
rs8020364	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9322889	0.99[ASN][1000 genomes]
rs9322890	0.92[ASN][1000 genomes]
rs9322893	0.94[ASN][1000 genomes]
rs9322894	0.99[ASN][1000 genomes]
rs9322897	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9322898	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9322899	0.94[ASN][1000 genomes]
rs9322901	0.85[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:32815000-32827000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:32815400-32825600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
7	chr14:32823600-32828400	Enhancers	Brain Substantia Nigra	brain
8	chr14:32824200-32825600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:32824200-32826600	Weak transcription	Brain Angular Gyrus	brain
10	chr14:32824400-32826000	Weak transcription	Brain Anterior Caudate	brain
11	chr14:32824400-32826000	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:32824600-32826400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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