Variant report

Variant	rs10483397
Chromosome Location	chr14:32831040-32831041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10129967	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10131297	0.87[ASN][1000 genomes]
rs10132146	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10134645	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10135655	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10136107	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136452	0.82[EUR][1000 genomes]
rs10137128	0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139496	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10140526	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143009	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143442	0.82[EUR][1000 genomes]
rs10148659	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10150678	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10151233	0.93[CEU][hapmap]
rs10151749	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10151983	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10151990	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10220343	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10431652	0.83[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12050081	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12717220	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12889258	0.82[EUR][1000 genomes]
rs12896756	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17098849	0.82[EUR][1000 genomes]
rs17098889	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1951688	0.83[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951690	0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs1998429	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28451992	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28563822	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28599717	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3784167	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3784171	0.90[JPT][hapmap]
rs3784173	0.82[EUR][1000 genomes]
rs66517744	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7141313	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7146562	0.82[EUR][1000 genomes]
rs7147285	0.82[EUR][1000 genomes]
rs7148036	0.82[EUR][1000 genomes]
rs7148165	0.94[EUR][1000 genomes]
rs7149335	0.88[ASW][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7151681	0.81[EUR][1000 genomes]
rs7153398	0.82[EUR][1000 genomes]
rs7160178	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs717616	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs8017400	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8020364	0.88[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322897	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322898	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386382	chr14:32830429-32831802	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
4	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:32828200-32831800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:32828200-32833400	Weak transcription	Brain Germinal Matrix	brain
7	chr14:32829000-32831400	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:32830400-32831400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:32830400-32831600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:32830400-32835000	Enhancers	Brain Anterior Caudate	brain
11	chr14:32830600-32831600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:32830600-32833400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:32830600-32840400	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:32830800-32831600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:32830800-32835600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:32831000-32831400	Weak transcription	Brain Substantia Nigra	brain
18	chr14:32831000-32831600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:32831000-32835400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:32831000-32838000	Enhancers	Brain Angular Gyrus	brain

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