Variant report

Variant	rs3784171
Chromosome Location	chr14:32809041-32809042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32789689..32792160-chr14:32808622..32812879,3	MCF-7	breast:
2	chr14:32807865..32809719-chr14:32810240..32812970,2	MCF-7	breast:
3	chr14:32802733..32804895-chr14:32807026..32809604,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10131297	0.86[EUR][1000 genomes]
rs10134645	0.81[ASN][1000 genomes]
rs10136107	0.81[ASN][1000 genomes]
rs10137128	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10137450	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10139567	0.88[CEU][hapmap]
rs10148659	0.87[ASN][1000 genomes]
rs10150574	0.88[CEU][hapmap]
rs10150670	0.90[CEU][hapmap]
rs10150678	1.00[ASN][1000 genomes]
rs10151233	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs10431651	0.82[CEU][hapmap]
rs10431652	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10483397	0.90[JPT][hapmap]
rs11849373	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs12883558	0.88[CEU][hapmap]
rs12885011	0.90[CEU][hapmap]
rs12891932	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12897283	0.88[CEU][hapmap]
rs1951688	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1951690	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs28656103	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784167	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs3784173	0.87[CHB][hapmap]
rs7146944	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148165	0.91[ASN][1000 genomes]
rs7149335	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7160178	0.87[ASN][1000 genomes]
rs717616	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019207	0.90[CEU][hapmap]
rs8020364	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs9322889	0.88[CEU][hapmap]
rs9322894	0.90[CEU][hapmap]
rs9322897	0.86[ASN][1000 genomes]
rs9322898	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9322899	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798445	chr14:32808361-32813639	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
8	chr14:32802800-32810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:32803200-32809200	Enhancers	Brain Substantia Nigra	brain
10	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
12	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:32806000-32810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:32806200-32811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:32806200-32811800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:32806400-32811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:32806400-32811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:32806400-32811400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:32806400-32811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:32806400-32811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:32807200-32810800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
23	chr14:32808600-32809200	Enhancers	Brain Germinal Matrix	brain
24	chr14:32808600-32809400	Enhancers	HSMMtube	muscle
25	chr14:32808800-32809200	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:32808800-32809600	Enhancers	HSMM	muscle
27	chr14:32809000-32810800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:32809000-32811000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:32809000-32811000	Weak transcription	Brain Hippocampus Middle	brain

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