Variant report

Variant	rs10431651
Chromosome Location	chr14:32833440-32833441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32833195..32835953-chr14:32837356..32840001,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10129967	0.93[ASN][1000 genomes]
rs10135545	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10136452	0.92[ASN][1000 genomes]
rs10139496	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10139567	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs10140077	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10140526	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10143009	0.93[ASN][1000 genomes]
rs10143442	0.91[ASN][1000 genomes]
rs10145282	0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap]
rs10150574	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes]
rs10150657	0.82[EUR][1000 genomes]
rs10150670	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10151233	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10220343	0.91[ASN][1000 genomes]
rs11849373	0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs11849501	0.83[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11849651	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs12050081	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12717220	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12879177	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12883558	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12885011	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12889258	0.92[ASN][1000 genomes]
rs12896756	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12897283	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17098769	0.83[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs17098849	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17098889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1998429	0.92[ASN][1000 genomes]
rs28451992	0.93[ASN][1000 genomes]
rs28563822	0.93[ASN][1000 genomes]
rs28599717	0.93[ASN][1000 genomes]
rs34247479	0.80[EUR][1000 genomes]
rs35403923	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784171	0.82[CEU][hapmap]
rs58625904	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571510	0.83[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs66517744	0.93[ASN][1000 genomes]
rs67938997	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71427210	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7146034	0.84[ASN][1000 genomes]
rs7146346	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7146562	0.92[ASN][1000 genomes]
rs7147028	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7147285	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7148036	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7148808	0.81[EUR][1000 genomes]
rs7151016	0.83[CEU][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes]
rs7151681	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7153398	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8006624	0.83[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs8017400	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8019207	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8020196	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8020197	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9285569	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9322889	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322890	0.86[ASN][1000 genomes]
rs9322893	0.88[ASN][1000 genomes]
rs9322894	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322899	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322901	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10431651	PPP2R3C	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
3	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:32830400-32835000	Enhancers	Brain Anterior Caudate	brain
5	chr14:32830600-32840400	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:32830800-32835600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:32831000-32835400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:32831000-32838000	Enhancers	Brain Angular Gyrus	brain
10	chr14:32831400-32834400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:32831400-32835000	Enhancers	Brain Hippocampus Middle	brain
12	chr14:32831400-32835200	Enhancers	Brain Substantia Nigra	brain
13	chr14:32831600-32834200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:32831600-32834600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:32831600-32834800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:32831600-32835200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:32831800-32835200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:32832000-32834200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32832200-32834200	Weak transcription	Right Ventricle	heart
20	chr14:32832200-32834800	Weak transcription	Left Ventricle	heart
21	chr14:32832600-32834400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:32833200-32834800	Weak transcription	Right Atrium	heart
23	chr14:32833400-32834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:32833400-32836000	Enhancers	Brain Germinal Matrix	brain

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